Package: erccdashboard

Version: 1.16.1

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:erccdashboard.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings erccdashboard_1.16.1.tar.gz

StartedAt: 2019-04-15 23:47:18 -0400 (Mon, 15 Apr 2019)

EndedAt: 2019-04-15 23:48:14 -0400 (Mon, 15 Apr 2019)

EllapsedTime: 56.8 seconds

RetCode: 0

Status:  OK

CheckDir: erccdashboard.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:erccdashboard.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings erccdashboard_1.16.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/erccdashboard.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘erccdashboard/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘erccdashboard’ version ‘1.16.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘erccdashboard’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dynRangePlot: no visible binding for global variable ‘value’
dynRangePlot: no visible binding for global variable ‘Rep’
saveERCCPlots: no visible global function definition for ‘par’
testDECount: no visible binding for global variable ‘Atrend’
testDECount: no visible binding for global variable ‘Dispersion’
testDECount: no visible binding for global variable ‘Ratio’
Undefined global functions or variables:
  Atrend Dispersion Ratio Rep par value
Consider adding
  importFrom("graphics", "par")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
estLODR 7.164  0.008    7.18
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.8-bioc/meat/erccdashboard.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL erccdashboard
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘erccdashboard’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (erccdashboard)

name	user	system	elapsed
ERCC	0.004	0.000	0.002
SEQC.Example	0	0	0
annotLODR	1.336	0.024	1.364
dynRangePlot	1.320	0.004	1.323
erccROC	1.448	0.024	1.476
estLODR	7.164	0.008	7.180
est_r_m	0.964	0.000	0.963
geneExprTest	0.980	0.000	0.985
initDat	0.160	0.000	0.157
maSignal	4.092	0.008	4.102
runDashboard	0	0	0
saveERCCPlots	0	0	0