Philipp Angerer
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/destiny |
| Branch: RELEASE_3_8 |
| Last Commit: fd8c2e5 |
| Last Changed Date: 2018-10-30 11:41:58 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:25:44 -0400 (Sat, 13 Apr 2019).
| Package 401/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| destiny 2.12.0 Philipp Angerer
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: destiny |
| Version: 2.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/destiny_2.12.0.tar.gz && rm -rf destiny.buildbin-libdir && mkdir destiny.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=destiny.buildbin-libdir destiny_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL destiny_2.12.0.zip && rm destiny_2.12.0.tar.gz destiny_2.12.0.zip |
| StartedAt: 2019-04-12 20:17:07 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:20:10 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 183.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/destiny_2.12.0.tar.gz && rm -rf destiny.buildbin-libdir && mkdir destiny.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=destiny.buildbin-libdir destiny_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL destiny_2.12.0.zip && rm destiny_2.12.0.tar.gz destiny_2.12.0.zip
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install for i386
* installing *source* package 'destiny' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/grDevices/include" -I"C:/extsoft/include" -ggdb -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/grDevices/include" -I"C:/extsoft/include" -ggdb -O2 -Wall -mtune=generic -c censoring.cpp -o censoring.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/grDevices/include" -I"C:/extsoft/include" -ggdb -O2 -Wall -mtune=generic -c knn.cpp -o knn.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/grDevices/include" -I"C:/extsoft/include" -ggdb -O2 -Wall -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o knn.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/destiny.buildbin-libdir/destiny/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'destiny'
finding HTML links ... done
DPT-matrix-methods html
DPT-methods html
DPT html
DiffusionMap-accessors html
DiffusionMap-class html
DiffusionMap-methods html
ExpressionSet-helpers html
Gene-Relevance-methods html
Gene-Relevance-plotting html
Gene-Relevance html
Sigmas-class html
coercions html
colorlegend html
cube_helix html
destiny-deprecated html
destiny-generics html
destiny html
dm_predict html
eig_decomp html
extractions html
find_dm_k html
find_sigmas html
find_tips html
guo html
knn html
l_which html
plot.DPT html
plot.DiffusionMap html
plot.Sigmas html
projection_dist html
random_root html
updateObject-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'destiny' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/grDevices/include" -I"C:/extsoft/include" -ggdb -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/grDevices/include" -I"C:/extsoft/include" -ggdb -O2 -Wall -mtune=generic -c censoring.cpp -o censoring.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/grDevices/include" -I"C:/extsoft/include" -ggdb -O2 -Wall -mtune=generic -c knn.cpp -o knn.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/grDevices/include" -I"C:/extsoft/include" -ggdb -O2 -Wall -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o knn.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/destiny.buildbin-libdir/destiny/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'destiny' as destiny_2.12.0.zip
* DONE (destiny)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'destiny' successfully unpacked and MD5 sums checked
In R CMD INSTALL