Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:47:45 -0400 (Tue, 16 Apr 2019).
Package 352/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ctc 1.56.0 Antoine Lucas
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: ctc |
Version: 1.56.0 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ctc.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ctc_1.56.0.tar.gz |
StartedAt: 2019-04-15 23:15:37 -0400 (Mon, 15 Apr 2019) |
EndedAt: 2019-04-15 23:15:52 -0400 (Mon, 15 Apr 2019) |
EllapsedTime: 14.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ctc.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ctc.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ctc_1.56.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/ctc.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ctc/DESCRIPTION’ ... OK * this is package ‘ctc’ version ‘1.56.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ctc’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘amap’ which was already attached by Depends. Please remove these calls from your code. Package in Depends field not imported from: ‘amap’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .First.lib: warning in .packages(all = TRUE): partial argument match of 'all' to 'all.available' .onLoad: warning in .packages(all = TRUE): partial argument match of 'all' to 'all.available' hclust2treeview: warning in .packages(all = TRUE): partial argument match of 'all' to 'all.available' hclust2treeview: no visible global function definition for ‘hclust’ hclust2treeview: no visible global function definition for ‘dist’ r2atr: no visible global function definition for ‘write.table’ r2cdt: no visible global function definition for ‘write.table’ r2cluster: no visible global function definition for ‘write.table’ r2gtr: no visible global function definition for ‘write.table’ r2xcluster: no visible global function definition for ‘write.table’ read.eisen: no visible global function definition for ‘read.table’ xcluster2r: no visible global function definition for ‘read.table’ Undefined global functions or variables: dist hclust read.table write.table Consider adding importFrom("stats", "dist", "hclust") importFrom("utils", "read.table", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.8-bioc/meat/ctc.Rcheck/00check.log’ for details.
ctc.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL ctc ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘ctc’ ... ** R ** demo ** exec ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ctc)
ctc.Rcheck/ctc-Ex.timings
name | user | system | elapsed | |
hc2Newick | 0.016 | 0.000 | 0.015 | |
hclust2treeview | 0.028 | 0.008 | 0.040 | |
r2cluster | 0.004 | 0.000 | 0.004 | |
r2gtr | 0.012 | 0.000 | 0.013 | |
r2xcluster | 0.004 | 0.000 | 0.003 | |
xcluster | 0 | 0 | 0 | |
xcluster2r | 0.000 | 0.000 | 0.003 | |