conumee 1.15.0
Volker Hovestadt
| Snapshot Date: 2018-10-22 16:45:16 -0400 (Mon, 22 Oct 2018) |
| URL: https://git.bioconductor.org/packages/conumee |
| Branch: master |
| Last Commit: c258ad2 |
| Last Changed Date: 2018-04-30 10:41:41 -0400 (Mon, 30 Apr 2018) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | TIMEOUT | OK | |
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### Running command:
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### chmod a+r conumee -R && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data conumee
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* checking for file 'conumee/DESCRIPTION' ... OK
* preparing 'conumee':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: DelayedArray
Loading required package: matrixStats
Attaching package: 'matrixStats'
The following objects are masked from 'package:Biobase':
anyMissing, rowMedians
Loading required package: BiocParallel
Attaching package: 'DelayedArray'
The following objects are masked from 'package:matrixStats':
colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges
The following objects are masked from 'package:base':
aperm, apply
Loading required package: Biostrings
Loading required package: XVector
Attaching package: 'Biostrings'
The following object is masked from 'package:DelayedArray':
type
The following object is masked from 'package:base':
strsplit
Loading required package: bumphunter
Loading required package: foreach
Loading required package: iterators
Loading required package: locfit
locfit 1.5-9.1 2013-03-22
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: IlluminaHumanMethylation450kanno.ilmn12.hg19
Loading required package: IlluminaHumanMethylation450kmanifest
Loading required package: IlluminaHumanMethylationEPICanno.ilm10b2.hg19
Attaching package: 'IlluminaHumanMethylationEPICanno.ilm10b2.hg19'
The following objects are masked from 'package:IlluminaHumanMethylation450kanno.ilmn12.hg19':
Islands.UCSC, Locations, Manifest, Other, SNPs.132CommonSingle,
SNPs.135CommonSingle, SNPs.137CommonSingle,
SNPs.138CommonSingle, SNPs.141CommonSingle,
SNPs.142CommonSingle, SNPs.144CommonSingle,
SNPs.146CommonSingle, SNPs.147CommonSingle, SNPs.Illumina
Loading required package: IlluminaHumanMethylationEPICmanifest
Quitting from lines 39-45 (conumee.Rmd)
Error: processing vignette 'conumee.Rmd' failed with diagnostics:
url does not exist.
Execution halted