Package: chromstaR

Version: 1.8.1

Command: rm -rf chromstaR.buildbin-libdir && mkdir chromstaR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chromstaR_1.8.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chromstaR.buildbin-libdir

StartedAt: 2019-04-16 03:50:27 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 03:51:16 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 48.7 seconds

RetCode: 0

Status:  OK

PackageFile: chromstaR_1.8.1.tgz

PackageFileSize: 6.357 MiB

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### Running command:
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###   rm -rf chromstaR.buildbin-libdir && mkdir chromstaR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chromstaR_1.8.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chromstaR.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=chromstaR.buildbin-libdir chromstaR_1.8.1.tar.gz'
>>>>>>> 

* installing *source* package ‘chromstaR’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c R_interface.cpp -o R_interface.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c densities.cpp -o densities.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c init.cpp -o init.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c scalehmm.cpp -o scalehmm.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c utility.cpp -o utility.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o chromstaR.so R_interface.o densities.o init.o scalehmm.o utility.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/chromstaR.buildbin-libdir/chromstaR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (chromstaR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR chromstaR.buildbin-libdir/chromstaR/libs//chromstaR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "chromstaR.buildbin-libdir/chromstaR/libs//chromstaR.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "chromstaR.buildbin-libdir/chromstaR/libs//chromstaR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "chromstaR.buildbin-libdir/chromstaR/libs//chromstaR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "chromstaR.buildbin-libdir/chromstaR/libs//chromstaR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "chromstaR.buildbin-libdir/chromstaR/libs//chromstaR.so"