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This page was generated on 2019-04-16 11:56:44 -0400 (Tue, 16 Apr 2019).
Package 203/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
casper 2.16.1 David Rossell
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | WARNINGS | OK |
Package: casper |
Version: 2.16.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL casper |
StartedAt: 2019-04-15 18:41:16 -0400 (Mon, 15 Apr 2019) |
EndedAt: 2019-04-15 18:42:27 -0400 (Mon, 15 Apr 2019) |
EllapsedTime: 71.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL casper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘casper’ ... ** libs clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c casper.cpp -o casper.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c cstat.cpp -o cstat.o cstat.cpp:16:19: warning: unused variable 'interface_c_sccs_id' [-Wunused-const-variable] static const char interface_c_sccs_id[] = "%W%"; ^ cstat.cpp:17:19: warning: unused variable 'mess_c_sccs_id' [-Wunused-const-variable] static const char mess_c_sccs_id[] = "%W%"; ^ cstat.cpp:18:19: warning: unused variable 'nrutil_c_sccs_id' [-Wunused-const-variable] static const char nrutil_c_sccs_id[] = "%W%"; ^ cstat.cpp:19:19: warning: unused variable 'vector_c_sccs_id' [-Wunused-const-variable] static const char vector_c_sccs_id[] = "%W%"; ^ cstat.cpp:20:19: warning: unused variable 'rand_c_sccs_id' [-Wunused-const-variable] static const char rand_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$"; ^ cstat.cpp:21:19: warning: unused variable 'cstat_c_sccs_id' [-Wunused-const-variable] static const char cstat_c_sccs_id[] = "@(#)$Workfile: cstat.c$ $Revision: 2011-08-23$"; ^ 6 warnings generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c dataframe.cpp -o dataframe.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c discretedf.cpp -o discretedf.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c dropVariant.cpp -o dropVariant.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c exon.cpp -o exon.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c fragFunc.c -o fragFunc.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c fragment.cpp -o fragment.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c functions.c -o functions.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c hash.c -o hash.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c join_exons.c -o join_exons.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c makeIslands.c -o makeIslands.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c model.cpp -o model.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c model_cmp.cpp -o model_cmp.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c pathCounts.c -o pathCounts.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c procBam.c -o procBam.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c rcasper.cpp -o rcasper.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c seppel.cpp -o seppel.o seppel.cpp:484:2: warning: 'delete[]' applied to a pointer that was allocated with 'new'; did you mean 'delete'? [-Wmismatched-new-delete] delete [] possiblemodels; ^ ˜˜˜ seppel.cpp:402:36: note: allocated with 'new' here vector<Model*>* possiblemodels = new vector<Model*>(); ^ 1 warning generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c simReads.c -o simReads.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c simReadsfunc.c -o simReadsfunc.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c smartmodeldist.cpp -o smartmodeldist.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c uniqQname.c -o uniqQname.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c variant.cpp -o variant.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c variant_cmp.cpp -o variant_cmp.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o casper.so casper.o cstat.o dataframe.o discretedf.o dropVariant.o exon.o fragFunc.o fragment.o functions.o hash.o join_exons.o makeIslands.o model.o model_cmp.o pathCounts.o procBam.o rcasper.o seppel.o simReads.o simReadsfunc.o smartmodeldist.o uniqQname.o variant.o variant_cmp.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/casper/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘transcripts’ in package ‘casper’ ** help Warning: /Users/biocbuild/bbs-3.8-bioc/meat/casper/man/getDistrs.Rd:47: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.8-bioc/meat/casper/man/getDistrs.Rd:54: unknown macro '\item' Warning: /Users/biocbuild/bbs-3.8-bioc/meat/casper/man/getDistrs.Rd:58: unknown macro '\item' *** installing help indices ** building package indices ** installing vignettes ‘casper.Rnw’ ** testing if installed package can be loaded * DONE (casper)