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CHECK report for affylmGUI on tokay1

This page was generated on 2019-04-13 11:19:25 -0400 (Sat, 13 Apr 2019).

Package 28/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affylmGUI 1.56.0
Gordon Smyth
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/affylmGUI
Branch: RELEASE_3_8
Last Commit: 44e9ad3
Last Changed Date: 2018-10-30 11:41:41 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: affylmGUI
Version: 1.56.0
Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:affylmGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings affylmGUI_1.56.0.tar.gz
StartedAt: 2019-04-13 00:26:20 -0400 (Sat, 13 Apr 2019)
EndedAt: 2019-04-13 00:29:01 -0400 (Sat, 13 Apr 2019)
EllapsedTime: 160.6 seconds
RetCode: 0
Status:  OK  
CheckDir: affylmGUI.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:affylmGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings affylmGUI_1.56.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/affylmGUI.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'affylmGUI/DESCRIPTION' ... OK
* this is package 'affylmGUI' version '1.56.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'affylmGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ChooseCDF: no visible binding for global variable '.affylmGUIglobals'
ChooseCDF : onOK: no visible binding for global variable
  '.affylmGUIglobals'
ChooseCDF : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
ChooseCDF : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
ChooseContrastParameterization: no visible binding for global variable
  'affylmGUIenvironment'
ChooseContrastParameterization: no visible binding for global variable
  '.affylmGUIglobals'
ChooseContrastParameterization : onOK: no visible binding for global
  variable '.affylmGUIglobals'
ChooseContrastParameterization : onCancel: no visible binding for
  global variable '.affylmGUIglobals'
ChooseContrastParameterization : <anonymous>: no visible binding for
  global variable '.affylmGUIglobals'
ChooseEbayesStatistic: no visible binding for global variable
  '.affylmGUIglobals'
ChooseEbayesStatistic : onOK: no visible binding for global variable
  '.affylmGUIglobals'
ChooseEbayesStatistic : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
ChooseEbayesStatistic : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
ComputeContrasts: no visible binding for global variable
  'affylmGUIenvironment'
ComputeLinearModelFit: no visible binding for global variable
  'affylmGUIenvironment'
ComputeLinearModelFit: no visible binding for global variable
  '.affylmGUIglobals'
DeleteContrastParameterization: no visible binding for global variable
  'affylmGUIenvironment'
DensityPlot: no visible binding for global variable
  'affylmGUIenvironment'
DensityPlot: no visible binding for global variable '.affylmGUIglobals'
DensityPlot : plotFunction: no visible binding for global variable
  '.affylmGUIglobals'
DensityPlotAll: no visible binding for global variable
  'affylmGUIenvironment'
DensityPlotAll: no visible binding for global variable
  '.affylmGUIglobals'
DensityPlotAll : plotFunction: no visible binding for global variable
  '.affylmGUIglobals'
DensityPlotAll : plotFunction: no visible binding for global variable
  'affylmGUIenvironment'
ExportHTMLreport: no visible binding for global variable
  'affylmGUIenvironment'
ExportNormalizedExpressionValues: no visible binding for global
  variable 'affylmGUIenvironment'
GetComponentsToExportInHTMLreport: no visible binding for global
  variable 'affylmGUIenvironment'
GetComponentsToExportInHTMLreport: no visible binding for global
  variable '.affylmGUIglobals'
GetComponentsToExportInHTMLreport : onOK: no visible binding for global
  variable '.affylmGUIglobals'
GetComponentsToExportInHTMLreport : onCancel: no visible binding for
  global variable '.affylmGUIglobals'
GetComponentsToExportInHTMLreport : <anonymous>: no visible binding for
  global variable '.affylmGUIglobals'
GetContrast: no visible binding for global variable '.affylmGUIglobals'
GetContrast: no visible binding for global variable
  'affylmGUIenvironment'
GetContrast : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetContrast : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetContrast : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetContrastNamesForHeatDiagram: no visible binding for global variable
  '.affylmGUIglobals'
GetContrastNamesForHeatDiagram : onOK: no visible binding for global
  variable '.affylmGUIglobals'
GetContrastNamesForHeatDiagram : onCancel: no visible binding for
  global variable '.affylmGUIglobals'
GetContrastNamesForHeatDiagram : <anonymous>: no visible binding for
  global variable '.affylmGUIglobals'
GetContrastParameterizationName: no visible binding for global variable
  '.affylmGUIglobals'
GetContrastParameterizationName : onOK: no visible binding for global
  variable '.affylmGUIglobals'
GetContrastParameterizationName : onCancel: no visible binding for
  global variable '.affylmGUIglobals'
GetContrastParameterizationName : <anonymous>: no visible binding for
  global variable '.affylmGUIglobals'
GetContrasts: no visible binding for global variable
  'affylmGUIenvironment'
GetDEcutoff: no visible binding for global variable '.affylmGUIglobals'
GetDEcutoff : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetDEcutoff : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetDEcutoff : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetGeneLabelsOptions: no visible binding for global variable
  '.affylmGUIglobals'
GetGeneLabelsOptions : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetGeneLabelsOptions : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetGeneLabelsOptions : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
GetJpegOrPngParams: no visible binding for global variable
  '.affylmGUIglobals'
GetJpegOrPngParams : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetJpegOrPngParams : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetJpegOrPngParams : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
GetJpegOrPngX11Params: no visible binding for global variable
  '.affylmGUIglobals'
GetJpegOrPngX11Params : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetJpegOrPngX11Params : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
GetJpegOrPngX11Params : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
GetLogPLMDataChoice: no visible binding for global variable
  '.affylmGUIglobals'
GetLogPLMDataChoice : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetLogPLMDataChoice : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetLogPLMDataChoice : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
GetMultipleContrasts: no visible binding for global variable
  '.affylmGUIglobals'
GetMultipleContrasts: no visible binding for global variable
  'affylmGUIenvironment'
GetMultipleContrasts : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetMultipleContrasts : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetMultipleContrasts : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
GetNormalizationMethod: no visible binding for global variable
  '.affylmGUIglobals'
GetNormalizationMethod : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
GetNormalizationMethod : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetNormalizationMethod : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
GetPValueCutoff: no visible binding for global variable
  '.affylmGUIglobals'
GetPValueCutoff : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetPValueCutoff : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetPValueCutoff : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetParameterizationName: no visible binding for global variable
  '.affylmGUIglobals'
GetParameterizationName : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetParameterizationName : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
GetParameterizationName : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
GetPlotLabels: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotLabels : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotLabels : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotLabels : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotSize: no visible binding for global variable '.affylmGUIglobals'
GetPlotSize : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotSize : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotSize : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotTitle: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotTitle : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotTitle : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetPlotTitle : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetResidualTypeChoice: no visible binding for global variable
  '.affylmGUIglobals'
GetResidualTypeChoice : onCancel: no visible binding for global
  variable '.affylmGUIglobals'
GetResidualTypeChoice : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetResidualTypeChoice : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
GetSetNames: no visible binding for global variable '.affylmGUIglobals'
GetSetNames : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetSetNames : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetSetNames : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetSlideNum: no visible binding for global variable
  'affylmGUIenvironment'
GetSlideNum: no visible binding for global variable '.affylmGUIglobals'
GetSlideNum : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetSlideNum : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetSlideNum : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetSlideNums: no visible binding for global variable
  'affylmGUIenvironment'
GetSlideNums: no visible binding for global variable
  '.affylmGUIglobals'
GetSlideNums : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetSlideNums : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetSlideNums : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetWhichProbes: no visible binding for global variable
  '.affylmGUIglobals'
GetWhichProbes : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetWhichProbes : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetWhichProbes : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetWtAreaParams: no visible binding for global variable
  '.affylmGUIglobals'
GetWtAreaParams : onOK: no visible binding for global variable
  'affylmGUIenvironment'
GetWtAreaParams : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetWtAreaParams : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetWtAreaParams : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetWtFlagParams: no visible binding for global variable
  '.affylmGUIglobals'
GetWtFlagParams : onOK: no visible binding for global variable
  '.affylmGUIglobals'
GetWtFlagParams : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
GetWtFlagParams : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
GetWtFlagParams: no visible binding for global variable
  'affylmGUIenvironment'
GetlimmaDataSetName: no visible binding for global variable
  'affylmGUIenvironment'
GetlimmaDataSetName: no visible binding for global variable
  '.affylmGUIglobals'
GetlimmaDataSetName : onOK: no visible binding for global variable
  'affylmGUIenvironment'
GetlimmaDataSetName : <anonymous>: no visible binding for global
  variable '.affylmGUIglobals'
HTMLplotUsingFunction: no visible binding for global variable
  '.HTML.file'
HeatDiagramDialog: no visible binding for global variable
  '.affylmGUIglobals'
HeatDiagramDialog : onOK: no visible binding for global variable
  '.affylmGUIglobals'
HeatDiagramDialog : onCancel: no visible binding for global variable
  '.affylmGUIglobals'
HeatDiagramDialog : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
HeatDiagramPlot: no visible binding for global variable
  'affylmGUIenvironment'
ImageArrayPlot: no visible binding for global variable
  'affylmGUIenvironment'
ImageArrayPlot: no visible binding for global variable
  '.affylmGUIglobals'
ImageArrayPlot : plotFunction: no visible binding for global variable
  '.affylmGUIglobals'
ImageQualityResidualPlot: no visible binding for global variable
  'affylmGUIenvironment'
ImageQualityResidualPlot: no visible binding for global variable
  '.affylmGUIglobals'
ImageQualityResidualPlot : plotFunction: no visible binding for global
  variable '.affylmGUIglobals'
ImageQualityWeightPlot: no visible binding for global variable
  'affylmGUIenvironment'
ImageQualityWeightPlot: no visible binding for global variable
  '.affylmGUIglobals'
ImageQualityWeightPlot : plotFunction: no visible binding for global
  variable '.affylmGUIglobals'
IntensityHistogram: no visible binding for global variable
  'affylmGUIenvironment'
IntensityHistogram: no visible binding for global variable
  '.affylmGUIglobals'
IntensityHistogram : plotFunction: no visible binding for global
  variable '.affylmGUIglobals'
IntensityHistogramAll: no visible binding for global variable
  'affylmGUIenvironment'
IntensityHistogramAll: no visible binding for global variable
  '.affylmGUIglobals'
IntensityHistogramAll : plotFunction: no visible binding for global
  variable '.affylmGUIglobals'
LogOddsPlot: no visible binding for global variable
  'affylmGUIenvironment'
NUSEPlotAll: no visible binding for global variable
  'affylmGUIenvironment'
NUSEPlotAll: no visible binding for global variable '.affylmGUIglobals'
NUSEPlotAll : plotFunction: no visible binding for global variable
  '.affylmGUIglobals'
NewLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
NormalizeNow: no visible binding for global variable
  'affylmGUIenvironment'
NormalizeNow: no visible binding for global variable
  '.affylmGUIglobals'
NormalizedIntensityBoxPlot: no visible binding for global variable
  'affylmGUIenvironment'
NormalizedIntensityBoxPlot: no visible binding for global variable
  '.affylmGUIglobals'
NormalizedIntensityBoxPlot : plotFunction: no visible binding for
  global variable '.affylmGUIglobals'
OpenALimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFFile: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles : onOK: no visible binding for global variable
  'affylmGUIenvironment'
OpenCDFandTargetsfiles: no visible binding for global variable
  'affylmGUIenvironment'
OpenTargetsFile: no visible binding for global variable
  'affylmGUIenvironment'
PlotOptions: no visible binding for global variable '.affylmGUIglobals'
PlotOptions : onOK: no visible binding for global variable
  '.affylmGUIglobals'
PlotOptions : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
QQTplot: no visible binding for global variable 'affylmGUIenvironment'
RLEPlotAll: no visible binding for global variable
  'affylmGUIenvironment'
RLEPlotAll: no visible binding for global variable '.affylmGUIglobals'
RLEPlotAll : plotFunction: no visible binding for global variable
  '.affylmGUIglobals'
RNADegradationPlotAll: no visible binding for global variable
  'affylmGUIenvironment'
RNADegradationPlotAll: no visible binding for global variable
  '.affylmGUIglobals'
RNADegradationPlotAll : plotFunction: no visible binding for global
  variable '.affylmGUIglobals'
RawIntensityBoxPlot: no visible binding for global variable
  'affylmGUIenvironment'
RawIntensityBoxPlot: no visible binding for global variable
  '.affylmGUIglobals'
RawIntensityBoxPlot : plotFunction: no visible binding for global
  variable '.affylmGUIglobals'
Resize: no visible binding for '<<-' assignment to 'LocalHScale'
Resize: no visible binding for '<<-' assignment to 'LocalVScale'
Resize: no visible binding for global variable 'LocalHScale'
Resize: no visible binding for global variable 'LocalVScale'
SaveAsLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
SaveAsLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SaveLimmaFile: no visible binding for global variable
  'affylmGUIenvironment'
SaveLimmaFile: no visible binding for global variable
  '.affylmGUIglobals'
SetWD: no visible binding for global variable '.affylmGUIglobals'
TclRequire: no visible binding for global variable '.affylmGUIglobals'
TclRequire : onDestroy: no visible binding for global variable
  '.affylmGUIglobals'
TclRequire : onOK: no visible binding for global variable
  '.affylmGUIglobals'
TclRequire : onOK: no visible binding for global variable
  'affylmGUIenvironment'
UpDownOrBoth: no visible binding for global variable
  '.affylmGUIglobals'
UpDownOrBoth : onOK: no visible binding for global variable
  '.affylmGUIglobals'
UpDownOrBoth : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
VennDiagramPlot: no visible binding for global variable
  'affylmGUIenvironment'
ViewContrastsMatrixAsPairs: no visible binding for global variable
  'affylmGUIenvironment'
ViewContrastsMatrixInTable: no visible binding for global variable
  'affylmGUIenvironment'
ViewExistingContrastParameterization: no visible binding for global
  variable 'affylmGUIenvironment'
ViewRNATargets: no visible binding for global variable
  'affylmGUIenvironment'
ViewRNATargets: no visible binding for global variable
  '.affylmGUIglobals'
ViewRNATargets : onClose: no visible binding for global variable
  '.affylmGUIglobals'
ViewRNATargets : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
affyPlotMA: no visible binding for global variable
  'affylmGUIenvironment'
affyPlotMA: no visible binding for global variable '.affylmGUIglobals'
affyPlotMA : plotFunction: no visible binding for global variable
  '.affylmGUIglobals'
affyPlotMAcontrast: no visible binding for global variable
  'affylmGUIenvironment'
affylmGUI: no visible binding for global variable
  'affylmGUIenvironment'
affylmGUI: no visible binding for global variable '.affylmGUIglobals'
affylmGUI : <anonymous>: no visible binding for global variable
  '.affylmGUIglobals'
chooseDir: no visible binding for global variable '.affylmGUIglobals'
evalRcode: no visible binding for global variable '.affylmGUIglobals'
evalRcode : runOverall: no visible binding for global variable
  '.affylmGUIglobals'
evalRcode : runOverall: no visible binding for global variable
  'affylmGUIenvironment'
generalPlotFunction: no visible binding for global variable
  '.affylmGUIglobals'
generalPlotFunction: no visible binding for global variable
  'affylmGUIenvironment'
initGlobals: no visible binding for global variable
  'affylmGUIenvironment'
onDestroy: no visible binding for global variable
  'affylmGUIenvironment'
onExit: no visible binding for global variable 'affylmGUIenvironment'
onExit: no visible binding for global variable '.affylmGUIglobals'
showTopTable: no visible binding for global variable
  'affylmGUIenvironment'
showTopTable : onOK: no visible binding for global variable
  'affylmGUIenvironment'
Undefined global functions or variables:
  .HTML.file .affylmGUIglobals LocalHScale LocalVScale
  affylmGUIenvironment
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.8-bioc/meat/affylmGUI.Rcheck/00check.log'
for details.

Installation output

affylmGUI.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/affylmGUI_1.56.0.tar.gz && rm -rf affylmGUI.buildbin-libdir && mkdir affylmGUI.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=affylmGUI.buildbin-libdir affylmGUI_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL affylmGUI_1.56.0.zip && rm affylmGUI_1.56.0.tar.gz affylmGUI_1.56.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1616k  100 1616k    0     0  21.6M      0 --:--:-- --:--:-- --:--:-- 22.8M

install for i386

* installing *source* package 'affylmGUI' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'affylmGUI'
    finding HTML links ... done
    ALGchangeLog                            html  
    affylmGUI                               html  
** building package indices
** installing vignettes
   'affylmGUI.Rnw' 
   'extract.Rnw' 
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'affylmGUI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affylmGUI' as affylmGUI_1.56.0.zip
* DONE (affylmGUI)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'affylmGUI' successfully unpacked and MD5 sums checked
In R CMD INSTALL

Tests output

Example timings