Tobias Verbeke
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/a4Base |
| Branch: RELEASE_3_8 |
| Last Commit: fc370b2 |
| Last Changed Date: 2018-10-30 11:41:47 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:21:37 -0400 (Sat, 13 Apr 2019).
| Package 2/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| a4Base 1.30.0 Tobias Verbeke
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | OK | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: a4Base |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/a4Base_1.30.0.tar.gz && rm -rf a4Base.buildbin-libdir && mkdir a4Base.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=a4Base.buildbin-libdir a4Base_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL a4Base_1.30.0.zip && rm a4Base_1.30.0.tar.gz a4Base_1.30.0.zip |
| StartedAt: 2019-04-12 20:26:14 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:27:09 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 55.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/a4Base_1.30.0.tar.gz && rm -rf a4Base.buildbin-libdir && mkdir a4Base.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=a4Base.buildbin-libdir a4Base_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL a4Base_1.30.0.zip && rm a4Base_1.30.0.tar.gz a4Base_1.30.0.zip
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install for i386
* installing *source* package 'a4Base' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'a4Base'
finding HTML links ... done
ExpressionSetWithComputation html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqEu0CU/R.INSTALL1bc4481b6ca/a4Base/man/ExpressionSetWithComputation.Rd:23: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqEu0CU/R.INSTALL1bc4481b6ca/a4Base/man/ExpressionSetWithComputation.Rd:24: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqEu0CU/R.INSTALL1bc4481b6ca/a4Base/man/ExpressionSetWithComputation.Rd:25: file link 'VersionedBiobase' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqEu0CU/R.INSTALL1bc4481b6ca/a4Base/man/ExpressionSetWithComputation.Rd:26: file link 'Versioned' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqEu0CU/R.INSTALL1bc4481b6ca/a4Base/man/ExpressionSetWithComputation.Rd:33: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
a4palette html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqEu0CU/R.INSTALL1bc4481b6ca/a4Base/man/a4palette.Rd:27: file link 'rainbow' in package 'grDevices' does not exist and so has been treated as a topic
addQuantilesColors html
boxPlot html
combineTwoExpressionSet html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqEu0CU/R.INSTALL1bc4481b6ca/a4Base/man/combineTwoExpressionSet.Rd:22: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
computeLogRatio html
createExpressionSet html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqEu0CU/R.INSTALL1bc4481b6ca/a4Base/man/createExpressionSet.Rd:30: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
filterVarInt html
heatmap.expressionSet html
histPvalue html
histpvalueplotter html
lassoReg html
limmaTwoLevels html
logReg html
nlcvTT html
plot1gene html
plotComb2Samples html
plotCombMultSamples html
plotCombination2genes html
plotLogRatio html
probabilitiesPlot html
probe2gene html
profilesPlot html
propDEgenes-methods html
propDEgenes html
propdegenescalculation html
replicates html
spectralMap-methods html
spectralMap html
tTest html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqEu0CU/R.INSTALL1bc4481b6ca/a4Base/man/tTest.Rd:40: file link 'rowttests' in package 'genefilter' does not exist and so has been treated as a topic
topTable-methods html
volcanoPlot-methods html
volcanoPlot html
volcanoplotter html
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'a4Base' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'a4Base' as a4Base_1.30.0.zip
* DONE (a4Base)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'a4Base' successfully unpacked and MD5 sums checked
In R CMD INSTALL