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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/XDE_2.28.0.tar.gz && rm -rf XDE.buildbin-libdir && mkdir XDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XDE.buildbin-libdir XDE_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL XDE_2.28.0.zip && rm XDE_2.28.0.tar.gz XDE_2.28.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1147k 100 1147k 0 0 1959k 0 --:--:-- --:--:-- --:--:-- 1970k
install for i386
* installing *source* package 'XDE' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Cholesky.cpp -o Cholesky.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Matrix_v2.cpp -o Matrix_v2.o
Matrix_v2.cpp: In function 'void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
Matrix_v2.cpp:244:7: warning: unused variable 'k' [-Wunused-variable]
int k = 1;
^
Matrix_v2.cpp:246:9: warning: unused variable 'j' [-Wunused-variable]
int i,j,r;
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Potential_v2.cpp -o Potential_v2.o
Potential_v2.cpp: In function 'double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Potential_v2.cpp:308:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
^
Potential_v2.cpp:310:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
^
Potential_v2.cpp:316:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < theGene.size(); k++)
^
Potential_v2.cpp:321:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Omega[0].size(); i++)
^
Potential_v2.cpp:322:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
^
Potential_v2.cpp:328:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
^
Potential_v2.cpp:329:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
^
Potential_v2.cpp:330:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
^
Potential_v2.cpp:335:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
^
Potential_v2.cpp:336:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
^
Potential_v2.cpp:345:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < Omega.size(); k++) {
^
Potential_v2.cpp:347:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < theGene[k].size(); i++)
^
Potential_v2.cpp:356:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++)
^
Potential_v2.cpp:364:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSub.size(); i++) {
^
Potential_v2.cpp:366:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaSub[i].size(); j++)
^
Potential_v2.cpp:369:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < USub.size(); i++) {
^
Potential_v2.cpp:371:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < USub[i].size(); j++)
^
Potential_v2.cpp:374:34: warning: statement has no effect [-Wunused-value]
if (theGene[k][i] == 1) include == 1;
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Random_v2.cpp -o Random_v2.o
Random_v2.cpp: In member function 'int Random::Discrete(const std::vector<double>&)':
Random_v2.cpp:159:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < prob.size(); i++)
^
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)':
Random_v2.cpp:512:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < w.size(); i++)
^
Random_v2.cpp:515:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < w[i].size(); j++)
^
Random_v2.cpp: In member function 'std::vector<std::vector<std::vector<double> > > Random::HyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:548:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < D.size(); k++) {
^
Random_v2.cpp:551:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Sigma[k].size(); i++)
^
Random_v2.cpp:557:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < temp.size(); i++)
^
Random_v2.cpp:558:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < temp[i].size(); j++)
^
Random_v2.cpp:571:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < D.size(); k++) {
^
Random_v2.cpp:585:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) DRR[i].resize(DRR.size());
^
Random_v2.cpp:586:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
^
Random_v2.cpp:587:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRS.size(); i++) DRS[i].resize(DSS.size());
^
Random_v2.cpp:588:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSR.size(); i++) DSR[i].resize(DRR.size());
^
Random_v2.cpp:590:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSS.size(); i++)
^
Random_v2.cpp:591:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DSS[i].size(); j++)
^
Random_v2.cpp:594:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRR.size(); i++)
^
Random_v2.cpp:595:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DRR[i].size(); j++)
^
Random_v2.cpp:598:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSR.size(); i++)
^
Random_v2.cpp:599:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DSR[i].size(); j++) {
^
Random_v2.cpp:608:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++) {
^
Random_v2.cpp:610:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaSS[i].size(); j++)
^
Random_v2.cpp:625:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) {
^
Random_v2.cpp:627:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DRR[i].size(); j++)
^
Random_v2.cpp:675:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < LDSSInverseT.size(); i++) {
^
Random_v2.cpp:677:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < LDSSInverseT[i].size(); j++)
^
Random_v2.cpp:693:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) {
^
Random_v2.cpp:695:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DSS.size(); j++)
^
Random_v2.cpp:705:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
^
Random_v2.cpp:706:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < mean[i].size(); j++)
^
Random_v2.cpp:726:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSR.size(); i++) {
^
Random_v2.cpp:728:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaSR[i].size(); j++)
^
Random_v2.cpp:740:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaRGivenS.size(); i++)
^
Random_v2.cpp:741:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaRGivenS[i].size(); j++)
^
Random_v2.cpp:746:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++)
^
Random_v2.cpp:747:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaSS[i].size(); j++)
^
Random_v2.cpp:749:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaRR.size(); i++)
^
Random_v2.cpp:750:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaRR[i].size(); j++)
^
Random_v2.cpp:752:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++)
^
Random_v2.cpp:753:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaRR.size(); j++) {
^
Random_v2.cpp:760:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < temp7.size(); i++)
^
Random_v2.cpp:761:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < temp7[i].size(); j++)
^
Random_v2.cpp: In member function 'std::vector<double> Random::GaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:790:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks[k].size(); k++)
^
Random_v2.cpp:807:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:812:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++) {
^
Random_v2.cpp:821:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
^
Random_v2.cpp:834:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSS.size(); i++) CovSS[i].resize(CovSS.size());
^
Random_v2.cpp:835:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovRR.size(); i++) CovRR[i].resize(CovRR.size());
^
Random_v2.cpp:836:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSR.size(); i++) CovSR[i].resize(CovRS.size());
^
Random_v2.cpp:837:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovRS.size(); i++) CovRS[i].resize(CovSR.size());
^
Random_v2.cpp:840:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSS.size(); i++)
^
Random_v2.cpp:841:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovSS[i].size(); j++)
^
Random_v2.cpp:844:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovRR.size(); i++)
^
Random_v2.cpp:845:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovRR[i].size(); j++)
^
Random_v2.cpp:848:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSR.size(); i++)
^
Random_v2.cpp:849:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovSR[i].size(); j++) {
^
Random_v2.cpp:863:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovRGivenS.size(); i++)
^
Random_v2.cpp:864:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovRGivenS[i].size(); j++)
^
Random_v2.cpp:877:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:884:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
^
Random_v2.cpp:889:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
^
Random_v2.cpp:894:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:899:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
^
Random_v2.cpp:901:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:913:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:918:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:923:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:928:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
^
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::MatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:948:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
^
Random_v2.cpp:950:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
^
Random_v2.cpp:966:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < U[0].size(); j++) {
^
Random_v2.cpp:968:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:973:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:976:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (j == U[0].size() - 1) first += z.size();
^
Random_v2.cpp:978:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:994:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
^
Random_v2.cpp:1007:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSS.size(); i++) OmegaSS[i].resize(OmegaSS.size());
^
Random_v2.cpp:1008:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaRR.size(); i++) OmegaRR[i].resize(OmegaRR.size());
^
Random_v2.cpp:1009:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSR.size(); i++) OmegaSR[i].resize(OmegaRS.size());
^
Random_v2.cpp:1010:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaRS.size(); i++) OmegaRS[i].resize(OmegaSR.size());
^
Random_v2.cpp:1012:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSS.size(); i++)
^
Random_v2.cpp:1013:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaSS[i].size(); j++)
^
Random_v2.cpp:1016:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaRR.size(); i++)
^
Random_v2.cpp:1017:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaRR[i].size(); j++)
^
Random_v2.cpp:1020:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSR.size(); i++)
^
Random_v2.cpp:1021:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaSR[i].size(); j++) {
^
Random_v2.cpp:1035:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaRGivenS.size(); i++)
^
Random_v2.cpp:1036:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaRGivenS[i].size(); j++)
^
Random_v2.cpp:1048:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < U[0].size(); j++) {
^
Random_v2.cpp:1050:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:1057:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
^
Random_v2.cpp:1062:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
^
Random_v2.cpp:1067:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:1070:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (j == U[0].size() - 1) first += z.size();
^
Random_v2.cpp:1072:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
^
Random_v2.cpp:1074:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:1086:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < U[k].size(); j++) {
^
Random_v2.cpp:1088:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:1093:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:1096:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (j == U[k].size() - 1) first += z.size();
^
Random_v2.cpp:1098:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:1133:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < LT.size(); i++) {
^
Random_v2.cpp:1135:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < LT[i].size(); j++)
^
Random_v2.cpp:1143:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < U.size(); i++)
^
Random_v2.cpp:1144:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < U[i].size(); j++)
^
Random_v2.cpp: In member function 'double Random::PotentialHyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<std::vector<double> > >&)':
Random_v2.cpp:1183:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < D.size(); k++)
^
Random_v2.cpp:1188:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < D.size(); k++)
^
Random_v2.cpp:1196:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
^
Random_v2.cpp:1197:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++) SigmaSS[i].resize(SigmaSS.size());
^
Random_v2.cpp:1199:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSS.size(); i++)
^
Random_v2.cpp:1200:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DSS[i].size(); j++) {
^
Random_v2.cpp: In member function 'double Random::PotentialGaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<double>&)':
Random_v2.cpp:1225:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UU.size(); i++)
^
Random_v2.cpp:1232:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++)
^
Random_v2.cpp:1236:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Cov[0].size(); i++)
^
Random_v2.cpp:1240:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
^
Random_v2.cpp:1241:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
^
Random_v2.cpp:1244:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Cov[k].size() - oldComponents[k].size(); i++)
^
Random_v2.cpp:1251:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < Cov.size(); k++) {
^
Random_v2.cpp:1258:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
^
Random_v2.cpp:1265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSub.size(); i++) {
^
Random_v2.cpp:1267:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovSub[i].size(); j++)
^
Random_v2.cpp:1271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < USub.size(); i++)
^
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1297:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < XT.size(); i++) {
^
Random_v2.cpp:1299:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < XT[i].size(); j++)
^
Random_v2.cpp:1310:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < temp3.size(); i++)
^
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1335:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UU.size(); i++)
^
Random_v2.cpp:1336:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[i].size(); j++)
^
Random_v2.cpp:1343:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
^
Random_v2.cpp:1345:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
^
Random_v2.cpp:1350:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Omega[0].size(); i++)
^
Random_v2.cpp:1351:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
^
Random_v2.cpp:1355:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
^
Random_v2.cpp:1356:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
^
Random_v2.cpp:1357:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
^
Random_v2.cpp:1360:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
^
Random_v2.cpp:1361:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
^
Random_v2.cpp:1380:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < Omega.size(); k++)
^
Random_v2.cpp:1385:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++)
^
Random_v2.cpp:1391:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSub.size(); i++) {
^
Random_v2.cpp:1393:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaSub[i].size(); j++)
^
Random_v2.cpp:1396:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < USub.size(); i++) {
^
Random_v2.cpp:1398:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < USub[i].size(); j++)
^
Random_v2.cpp: In member function 'std::vector<int> Random::Permutation(int)':
Random_v2.cpp:1822:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < perm.size(); k++)
^
Random_v2.cpp: In member function 'double Random::lnGamma(double)':
Random_v2.cpp:1847:10: warning: unused variable 'x' [-Wunused-variable]
double x,y,tt,sum;
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:8:0,
from Rinterface_v2.cpp:2:
Random.h:19:0: warning: "PI" redefined
#define PI 3.14159265
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include/R.h:85:0,
from Rinterface_v2.cpp:1:
C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include/R_ext/Constants.h:36:0: note: this is the location of the previous definition
#define PI M_PI
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Structure.cpp -o Structure.o
In file included from Structure.cpp:29:0:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const string&, const std::vector<Potential*>&)':
ReportPotential.h:32:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)':
ReportPotential.h:48:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
ReportPotential.h:78:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from Structure.cpp:30:0:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const string&, const std::vector<Update*>&)':
ReportAcceptance.h:32:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)':
ReportAcceptance.h:48:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
ReportAcceptance.h:76:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
In file included from ReportProbDelta.h:9:0,
from Structure.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
In file included from Structure.cpp:31:0:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const string&, Structure*, int)':
ReportProbDelta.h:53:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::˜ReportProbDelta()':
ReportProbDelta.h:96:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
Structure.cpp: In member function 'void Structure::setParameterValues(std::string&)':
Structure.cpp:528:8: warning: unused variable 'c' [-Wunused-variable]
char c;
^
Structure.cpp: In member function 'void Structure::setNumberOfUpdates(std::string&, std::vector<int>&, std::vector<Update*>&) const':
Structure.cpp:1642:8: warning: unused variable 'nRead' [-Wunused-variable]
int nRead = sscanf(var1,"%d",&value);
^
Structure.cpp:1668:12: warning: unused variable 'nRead' [-Wunused-variable]
int nRead = sscanf(var2,"%le",&value);
^
Structure.cpp:1579:12: warning: unused variable 'c' [-Wunused-variable]
char c;
^
Structure.cpp: In member function 'ReportDiffexpressed* Structure::setReports(std::string&, int&, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, int)':
Structure.cpp:1728:12: warning: unused variable 'c' [-Wunused-variable]
char c;
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Update_v2.cpp -o Update_v2.o
Update_v2.cpp: In function 'void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector<std::vector<std::vector<double> > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3919:10: warning: unused variable 'pot' [-Wunused-variable]
double pot = - OmegaGibbs(df,D,oldClique,oldComponents,Q,G,Delta,
^
Update_v2.cpp: In function 'void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3973:10: warning: unused variable 'pot' [-Wunused-variable]
double pot = DeltaStarGibbs(oldClique,oldComponents,Q,G,S,newValues,
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Utility_v2.cpp -o Utility_v2.o
Utility_v2.cpp: In function 'double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:221:12: warning: unused variable 'detPrior' [-Wunused-variable]
double detPrior = inverse(var,varInv);
^
Utility_v2.cpp:228:12: warning: unused variable 'detPosterior' [-Wunused-variable]
double detPosterior = 1.0 /inverse(varInv,var);
^
Utility_v2.cpp: In function 'double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:303:9: warning: unused variable 's' [-Wunused-variable]
int s;
^
Utility_v2.cpp:328:12: warning: unused variable 'detPrior' [-Wunused-variable]
double detPrior = inverse(var,varInv);
^
Utility_v2.cpp:334:12: warning: unused variable 'detPosterior' [-Wunused-variable]
double detPosterior = 1.0 / inverse(varInv,var);
^
Utility_v2.cpp: In function 'void updateMRF1perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:413:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++) {
^
Utility_v2.cpp:435:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++) {
^
Utility_v2.cpp:447:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (ggg = 0; ggg < neighbour[gene].size(); ggg++) {
^
Utility_v2.cpp: In function 'double perfectMRF1_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:556:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
^
Utility_v2.cpp:600:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++)
^
Utility_v2.cpp: In function 'void updateMRF2perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, Random&)':
Utility_v2.cpp:635:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
^
Utility_v2.cpp: In function 'double perfectMRF2_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, unsigned int*, int)':
Utility_v2.cpp:723:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
^
Utility_v2.cpp:760:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
^
Utility_v2.cpp:764:6: warning: unused variable 'ngg' [-Wunused-variable]
int ngg = neighbour[gg].size();
^
Utility_v2.cpp: In function 'void updateMRF2perfect(int, int, int, int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:793:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
^
Utility_v2.cpp: In function 'double perfectMRF2(int*, int, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:904:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
^
Utility_v2.cpp:949:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
^
Utility_v2.cpp:954:8: warning: unused variable 'ngg' [-Wunused-variable]
int ngg = neighbour[gg].size();
^
Utility_v2.cpp: In function 'double OmegaGibbs(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1027:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g1 = 0; g1 < DNew[0].size(); g1++)
^
Utility_v2.cpp:1028:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g2 = 0; g2 < DNew[0][g1].size(); g2++)
^
Utility_v2.cpp:1036:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < DNew.size(); k++) {
^
Utility_v2.cpp:1041:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g = 0; g < oldComponents[k].size(); g++) {
^
Utility_v2.cpp:1047:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g = 0; g < cliqueSize - oldComponents[k].size(); g++) {
^
Utility_v2.cpp:1059:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g1 = 0; g1 < DNew[k].size(); g1++)
^
Utility_v2.cpp:1060:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g2 = 0; g2 < DNew[k][g1].size(); g2++)
^
Utility_v2.cpp: In function 'double DeltaStarGibbs(const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1096:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaInv.size(); k++)
^
Utility_v2.cpp:1101:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaSep.size(); k++) {
^
Utility_v2.cpp:1104:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++) {
^
Utility_v2.cpp:1107:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < oldComponents[k].size(); j++) {
^
Utility_v2.cpp:1115:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaSep.size(); k++) {
^
Utility_v2.cpp:1129:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < Omega.size(); k++) {
^
Utility_v2.cpp:1133:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = 0; gg < oldComponents[k].size(); gg++)
^
Utility_v2.cpp:1135:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = oldComponents[k].size(); gg < Omega[k].size(); gg++) {
^
Utility_v2.cpp:1238:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaInv.size(); k++) {
^
Utility_v2.cpp:1240:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (r = 0; r < nr[k].size(); r++) {
^
Utility_v2.cpp:1242:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (s = 0; s < nr[k].size(); s++) {
^
Utility_v2.cpp:1258:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaSepInv.size(); k++) {
^
Utility_v2.cpp:1260:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (r = 0; r < oldComponents[k].size(); r++) {
^
Utility_v2.cpp:1262:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (s = 0; s < oldComponents[k].size(); s++) {
^
Utility_v2.cpp:1409:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (index = 0; index < L.size(); index++)
^
Utility_v2.cpp:1458:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < VinvSparseReversed.size(); k++)
^
Utility_v2.cpp:1460:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < VinvSparseReversed.size(); k++) {
^
Utility_v2.cpp:1501:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (index = 0; index < cholReversed.size(); index++)
^
Utility_v2.cpp:1563:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < chol.size(); k++)
^
Utility_v2.cpp:1565:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < cholReversed.size(); k++) {
^
Utility_v2.cpp:1600:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < cholT.size(); k++)
^
Utility_v2.cpp:1602:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < chol.size(); i++) {
^
Utility_v2.cpp:1653:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++) {
^
Utility_v2.cpp:1693:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < z.size(); k++)
^
Utility_v2.cpp:1713:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < sample.size(); i++) {
^
Utility_v2.cpp:1779:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < sample.size(); i++) {
^
Utility_v2.cpp: In function 'void inverseTransformOmega(const std::vector<std::vector<std::vector<double> > >&, double*)':
Utility_v2.cpp:1875:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaTransformed.size(); k++) {
^
Utility_v2.cpp:1877:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaTransformed[k].size(); i++)
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:16:0:
Random.h:19:0: warning: "PI" redefined
#define PI 3.14159265
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include/R.h:85:0,
from diffExpressed_main.cpp:4:
C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include/R_ext/Constants.h:36:0: note: this is the location of the previous definition
#define PI M_PI
^
In file included from diffExpressed_main.cpp:22:0:
PotentialX.h: In destructor 'virtual PotentialX::˜PotentialX()':
PotentialX.h:44:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from diffExpressed_main.cpp:31:0:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::˜PotentialSigma2()':
PotentialSigma2.h:44:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from diffExpressed_main.cpp:32:0:
PotentialPhi.h: In destructor 'virtual PotentialPhi::˜PotentialPhi()':
PotentialPhi.h:44:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from diffExpressed_main.cpp:33:0:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
In file included from diffExpressed_main.cpp:41:0:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::˜UpdateDeltaMH()':
UpdateDeltaMH.h:59:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from UpdateSigma2MH.h:4:0,
from diffExpressed_main.cpp:43:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
UpdateMultiplicativePositive.h:53:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable.size(); i++)
^
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable.size(); i++)
^
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
UpdateMultiplicativePositive.h:127:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
^
UpdateMultiplicativePositive.h:130:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable2.size(); i++)
^
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
^
UpdateMultiplicativePositive.h:162:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable2.size(); i++)
^
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
^
In file included from diffExpressed_main.cpp:43:0:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::˜UpdateSigma2MH()':
UpdateSigma2MH.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:44:0:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateTMH.h: In destructor 'virtual UpdateTMH::˜UpdateTMH()':
UpdateTMH.h:60:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:45:0:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateLMH.h: In destructor 'virtual UpdateLMH::˜UpdateLMH()':
UpdateLMH.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:46:0:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::˜UpdatePhiMH()':
UpdatePhiMH.h:57:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:47:0:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::˜UpdateThetaMH()':
UpdateThetaMH.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:48:0:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::˜UpdateLambdaMH()':
UpdateLambdaMH.h:59:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:143:0:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:55:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
diffExpressed_main.cpp:202:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < update.size(); k++)
^
diffExpressed_main.cpp:217:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < report.size(); k++)
^
diffExpressed_main.cpp:224:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < report.size(); i++)
^
diffExpressed_main.cpp:227:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o registerDynamicSymbol.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/XDE.buildbin-libdir/XDE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: For function 'dims', signature 'Parameters': argument in method definition changed from (object) to (x)
** help
*** installing help indices
converting help for package 'XDE'
finding HTML links ... done
ExpressionSetList-class html
ExpressionSetList-methods html
Parameters-class html
XdeMcmc-class html
XdeParameter-class html
burnin html
calculatePosteriorAvg html
empiricalStart html
expressionSetList html
firstMcmc html
geneCenter html
hyperparameters html
iterations html
lastMcmc html
output html
pairs html
posteriorAvg html
seed html
ssStatistic html
standardizeSamples html
studyCenter html
symbolsInteresting html
thin html
tuning html
updates html
xde html
xmcmc html
xsScores html
zeroNu html
** building package indices
** installing vignettes
'XDE.Rnw'
'XdeParameterClass.Rnw'
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'XDE' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Cholesky.cpp -o Cholesky.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Matrix_v2.cpp -o Matrix_v2.o
Matrix_v2.cpp: In function 'void matrixMult(const std::vector<std::vector<double> >&, const std::vector<double>&, std::vector<double>&)':
Matrix_v2.cpp:244:7: warning: unused variable 'k' [-Wunused-variable]
int k = 1;
^
Matrix_v2.cpp:246:9: warning: unused variable 'j' [-Wunused-variable]
int i,j,r;
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Potential_v2.cpp -o Potential_v2.o
Potential_v2.cpp: In function 'double potentialDDeltaStar_HyperInverseWishart(int, const double*, const double*, const double*, const double*, const double*, int, int, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Potential_v2.cpp:308:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
^
Potential_v2.cpp:310:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
^
Potential_v2.cpp:316:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < theGene.size(); k++)
^
Potential_v2.cpp:321:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Omega[0].size(); i++)
^
Potential_v2.cpp:322:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
^
Potential_v2.cpp:328:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
^
Potential_v2.cpp:329:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
^
Potential_v2.cpp:330:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
^
Potential_v2.cpp:335:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
^
Potential_v2.cpp:336:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++) {
^
Potential_v2.cpp:345:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < Omega.size(); k++) {
^
Potential_v2.cpp:347:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < theGene[k].size(); i++)
^
Potential_v2.cpp:356:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++)
^
Potential_v2.cpp:364:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSub.size(); i++) {
^
Potential_v2.cpp:366:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaSub[i].size(); j++)
^
Potential_v2.cpp:369:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < USub.size(); i++) {
^
Potential_v2.cpp:371:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < USub[i].size(); j++)
^
Potential_v2.cpp:374:34: warning: statement has no effect [-Wunused-value]
if (theGene[k][i] == 1) include == 1;
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Random_v2.cpp -o Random_v2.o
Random_v2.cpp: In member function 'int Random::Discrete(const std::vector<double>&)':
Random_v2.cpp:159:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < prob.size(); i++)
^
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::CorrelationStandardInverseWishartAlternativeParam(int, double)':
Random_v2.cpp:512:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < w.size(); i++)
^
Random_v2.cpp:515:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < w[i].size(); j++)
^
Random_v2.cpp: In member function 'std::vector<std::vector<std::vector<double> > > Random::HyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:548:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < D.size(); k++) {
^
Random_v2.cpp:551:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Sigma[k].size(); i++)
^
Random_v2.cpp:557:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < temp.size(); i++)
^
Random_v2.cpp:558:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < temp[i].size(); j++)
^
Random_v2.cpp:571:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < D.size(); k++) {
^
Random_v2.cpp:585:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) DRR[i].resize(DRR.size());
^
Random_v2.cpp:586:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
^
Random_v2.cpp:587:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRS.size(); i++) DRS[i].resize(DSS.size());
^
Random_v2.cpp:588:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSR.size(); i++) DSR[i].resize(DRR.size());
^
Random_v2.cpp:590:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSS.size(); i++)
^
Random_v2.cpp:591:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DSS[i].size(); j++)
^
Random_v2.cpp:594:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRR.size(); i++)
^
Random_v2.cpp:595:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DRR[i].size(); j++)
^
Random_v2.cpp:598:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSR.size(); i++)
^
Random_v2.cpp:599:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DSR[i].size(); j++) {
^
Random_v2.cpp:608:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++) {
^
Random_v2.cpp:610:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaSS[i].size(); j++)
^
Random_v2.cpp:625:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) {
^
Random_v2.cpp:627:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DRR[i].size(); j++)
^
Random_v2.cpp:675:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < LDSSInverseT.size(); i++) {
^
Random_v2.cpp:677:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < LDSSInverseT[i].size(); j++)
^
Random_v2.cpp:693:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DRR.size(); i++) {
^
Random_v2.cpp:695:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DSS.size(); j++)
^
Random_v2.cpp:705:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
^
Random_v2.cpp:706:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < mean[i].size(); j++)
^
Random_v2.cpp:726:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSR.size(); i++) {
^
Random_v2.cpp:728:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaSR[i].size(); j++)
^
Random_v2.cpp:740:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaRGivenS.size(); i++)
^
Random_v2.cpp:741:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaRGivenS[i].size(); j++)
^
Random_v2.cpp:746:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++)
^
Random_v2.cpp:747:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaSS[i].size(); j++)
^
Random_v2.cpp:749:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaRR.size(); i++)
^
Random_v2.cpp:750:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaRR[i].size(); j++)
^
Random_v2.cpp:752:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++)
^
Random_v2.cpp:753:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < SigmaRR.size(); j++) {
^
Random_v2.cpp:760:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < temp7.size(); i++)
^
Random_v2.cpp:761:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < temp7[i].size(); j++)
^
Random_v2.cpp: In member function 'std::vector<double> Random::GaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:790:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks[k].size(); k++)
^
Random_v2.cpp:807:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:812:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++) {
^
Random_v2.cpp:821:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
^
Random_v2.cpp:834:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSS.size(); i++) CovSS[i].resize(CovSS.size());
^
Random_v2.cpp:835:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovRR.size(); i++) CovRR[i].resize(CovRR.size());
^
Random_v2.cpp:836:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSR.size(); i++) CovSR[i].resize(CovRS.size());
^
Random_v2.cpp:837:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovRS.size(); i++) CovRS[i].resize(CovSR.size());
^
Random_v2.cpp:840:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSS.size(); i++)
^
Random_v2.cpp:841:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovSS[i].size(); j++)
^
Random_v2.cpp:844:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovRR.size(); i++)
^
Random_v2.cpp:845:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovRR[i].size(); j++)
^
Random_v2.cpp:848:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSR.size(); i++)
^
Random_v2.cpp:849:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovSR[i].size(); j++) {
^
Random_v2.cpp:863:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovRGivenS.size(); i++)
^
Random_v2.cpp:864:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovRGivenS[i].size(); j++)
^
Random_v2.cpp:877:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:884:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
^
Random_v2.cpp:889:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
^
Random_v2.cpp:894:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:899:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
^
Random_v2.cpp:901:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:913:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:918:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:923:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:928:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
^
Random_v2.cpp: In member function 'std::vector<std::vector<double> > Random::MatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Random_v2.cpp:948:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
^
Random_v2.cpp:950:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
^
Random_v2.cpp:966:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < U[0].size(); j++) {
^
Random_v2.cpp:968:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:973:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:976:11: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (j == U[0].size() - 1) first += z.size();
^
Random_v2.cpp:978:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:994:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
^
Random_v2.cpp:1007:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSS.size(); i++) OmegaSS[i].resize(OmegaSS.size());
^
Random_v2.cpp:1008:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaRR.size(); i++) OmegaRR[i].resize(OmegaRR.size());
^
Random_v2.cpp:1009:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSR.size(); i++) OmegaSR[i].resize(OmegaRS.size());
^
Random_v2.cpp:1010:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaRS.size(); i++) OmegaRS[i].resize(OmegaSR.size());
^
Random_v2.cpp:1012:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSS.size(); i++)
^
Random_v2.cpp:1013:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaSS[i].size(); j++)
^
Random_v2.cpp:1016:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaRR.size(); i++)
^
Random_v2.cpp:1017:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaRR[i].size(); j++)
^
Random_v2.cpp:1020:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSR.size(); i++)
^
Random_v2.cpp:1021:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaSR[i].size(); j++) {
^
Random_v2.cpp:1035:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaRGivenS.size(); i++)
^
Random_v2.cpp:1036:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaRGivenS[i].size(); j++)
^
Random_v2.cpp:1048:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < U[0].size(); j++) {
^
Random_v2.cpp:1050:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:1057:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
^
Random_v2.cpp:1062:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++)
^
Random_v2.cpp:1067:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:1070:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (j == U[0].size() - 1) first += z.size();
^
Random_v2.cpp:1072:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < obs.size(); i++)
^
Random_v2.cpp:1074:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:1086:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < U[k].size(); j++) {
^
Random_v2.cpp:1088:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:1093:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < vec.size(); i++)
^
Random_v2.cpp:1096:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (j == U[k].size() - 1) first += z.size();
^
Random_v2.cpp:1098:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < z.size(); i++)
^
Random_v2.cpp:1133:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < LT.size(); i++) {
^
Random_v2.cpp:1135:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < LT[i].size(); j++)
^
Random_v2.cpp:1143:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < U.size(); i++)
^
Random_v2.cpp:1144:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < U[i].size(); j++)
^
Random_v2.cpp: In member function 'double Random::PotentialHyperInverseWishart(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<std::vector<double> > >&)':
Random_v2.cpp:1183:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < D.size(); k++)
^
Random_v2.cpp:1188:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < D.size(); k++)
^
Random_v2.cpp:1196:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSS.size(); i++) DSS[i].resize(DSS.size());
^
Random_v2.cpp:1197:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < SigmaSS.size(); i++) SigmaSS[i].resize(SigmaSS.size());
^
Random_v2.cpp:1199:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < DSS.size(); i++)
^
Random_v2.cpp:1200:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < DSS[i].size(); j++) {
^
Random_v2.cpp: In member function 'double Random::PotentialGaussianGraphicalModel(const std::vector<double>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<double>&)':
Random_v2.cpp:1225:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UU.size(); i++)
^
Random_v2.cpp:1232:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++)
^
Random_v2.cpp:1236:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Cov[0].size(); i++)
^
Random_v2.cpp:1240:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
^
Random_v2.cpp:1241:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
^
Random_v2.cpp:1244:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Cov[k].size() - oldComponents[k].size(); i++)
^
Random_v2.cpp:1251:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < Cov.size(); k++) {
^
Random_v2.cpp:1258:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Cov.size(); k++) {
^
Random_v2.cpp:1265:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < CovSub.size(); i++) {
^
Random_v2.cpp:1267:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < CovSub[i].size(); j++)
^
Random_v2.cpp:1271:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < USub.size(); i++)
^
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1297:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < XT.size(); i++) {
^
Random_v2.cpp:1299:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < XT[i].size(); j++)
^
Random_v2.cpp:1310:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < temp3.size(); i++)
^
Random_v2.cpp: In member function 'double Random::PotentialMatrixVariateNormal(const std::vector<std::vector<double> >&, const std::vector<std::vector<double> >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, const std::vector<std::vector<double> >&)':
Random_v2.cpp:1335:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UU.size(); i++)
^
Random_v2.cpp:1336:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[i].size(); j++)
^
Random_v2.cpp:1343:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < UBlocks.size(); k++) {
^
Random_v2.cpp:1345:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < UBlocks[k].size(); i++)
^
Random_v2.cpp:1350:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Omega[0].size(); i++)
^
Random_v2.cpp:1351:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
^
Random_v2.cpp:1355:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++) {
^
Random_v2.cpp:1356:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++)
^
Random_v2.cpp:1357:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
^
Random_v2.cpp:1360:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < Omega[k].size() - oldComponents[k].size(); i++)
^
Random_v2.cpp:1361:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < UU[first].size(); j++)
^
Random_v2.cpp:1380:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < Omega.size(); k++)
^
Random_v2.cpp:1385:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < Omega.size(); k++)
^
Random_v2.cpp:1391:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaSub.size(); i++) {
^
Random_v2.cpp:1393:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < OmegaSub[i].size(); j++)
^
Random_v2.cpp:1396:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < USub.size(); i++) {
^
Random_v2.cpp:1398:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < USub[i].size(); j++)
^
Random_v2.cpp: In member function 'std::vector<int> Random::Permutation(int)':
Random_v2.cpp:1822:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < perm.size(); k++)
^
Random_v2.cpp: In member function 'double Random::lnGamma(double)':
Random_v2.cpp:1847:10: warning: unused variable 'x' [-Wunused-variable]
double x,y,tt,sum;
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Rinterface_v2.cpp -o Rinterface_v2.o
In file included from Update_v2.h:8:0,
from Rinterface_v2.cpp:2:
Random.h:19:0: warning: "PI" redefined
#define PI 3.14159265
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include/R.h:85:0,
from Rinterface_v2.cpp:1:
C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include/R_ext/Constants.h:36:0: note: this is the location of the previous definition
#define PI M_PI
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Structure.cpp -o Structure.o
In file included from Structure.cpp:29:0:
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(const string&, const std::vector<Potential*>&)':
ReportPotential.h:32:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
ReportPotential.h: In constructor 'ReportPotential::ReportPotential(double*, const std::vector<Potential*>&)':
ReportPotential.h:48:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
ReportPotential.h: In member function 'virtual void ReportPotential::report(const Structure*)':
ReportPotential.h:69:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
ReportPotential.h:78:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from Structure.cpp:30:0:
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(const string&, const std::vector<Update*>&)':
ReportAcceptance.h:32:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
ReportAcceptance.h: In constructor 'ReportAcceptance::ReportAcceptance(double*, const std::vector<Update*>&)':
ReportAcceptance.h:48:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
ReportAcceptance.h: In member function 'virtual void ReportAcceptance::report(const Structure*)':
ReportAcceptance.h:67:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
ReportAcceptance.h:76:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
In file included from ReportProbDelta.h:9:0,
from Structure.cpp:31:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
In file included from Structure.cpp:31:0:
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(const string&, Structure*, int)':
ReportProbDelta.h:53:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
ReportProbDelta.h: In constructor 'ReportProbDelta::ReportProbDelta(double*, Structure*, int)':
ReportProbDelta.h:85:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
ReportProbDelta.h: In destructor 'virtual ReportProbDelta::˜ReportProbDelta()':
ReportProbDelta.h:96:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
Structure.cpp: In member function 'void Structure::setParameterValues(std::string&)':
Structure.cpp:528:8: warning: unused variable 'c' [-Wunused-variable]
char c;
^
Structure.cpp: In member function 'void Structure::setNumberOfUpdates(std::string&, std::vector<int>&, std::vector<Update*>&) const':
Structure.cpp:1642:8: warning: unused variable 'nRead' [-Wunused-variable]
int nRead = sscanf(var1,"%d",&value);
^
Structure.cpp:1668:12: warning: unused variable 'nRead' [-Wunused-variable]
int nRead = sscanf(var2,"%le",&value);
^
Structure.cpp:1579:12: warning: unused variable 'c' [-Wunused-variable]
char c;
^
Structure.cpp: In member function 'ReportDiffexpressed* Structure::setReports(std::string&, int&, std::vector<Potential*>&, std::vector<Update*>&, std::vector<Report*>&, int)':
Structure.cpp:1728:12: warning: unused variable 'c' [-Wunused-variable]
char c;
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Update_v2.cpp -o Update_v2.o
Update_v2.cpp: In function 'void updateOmega_HyperInverseWishart(unsigned int*, int*, std::vector<std::vector<std::vector<double> > >&, int, int, const double*, const double*, const double*, const double*, const double*, double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3919:10: warning: unused variable 'pot' [-Wunused-variable]
double pot = - OmegaGibbs(df,D,oldClique,oldComponents,Q,G,Delta,
^
Update_v2.cpp: In function 'void updateDDeltaStar_HyperInverseWishart(unsigned int*, int*, double*, int, int, const int*, const double*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&)':
Update_v2.cpp:3973:10: warning: unused variable 'pot' [-Wunused-variable]
double pot = DeltaStarGibbs(oldClique,oldComponents,Q,G,S,newValues,
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Utility_v2.cpp -o Utility_v2.o
Utility_v2.cpp: In function 'double nuGibbs(double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:221:12: warning: unused variable 'detPrior' [-Wunused-variable]
double detPrior = inverse(var,varInv);
^
Utility_v2.cpp:228:12: warning: unused variable 'detPosterior' [-Wunused-variable]
double detPosterior = 1.0 /inverse(varInv,var);
^
Utility_v2.cpp: In function 'double DeltaGibbs(int, double*, int, int, const int*, double, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*, const double*, Random&, int)':
Utility_v2.cpp:303:9: warning: unused variable 's' [-Wunused-variable]
int s;
^
Utility_v2.cpp:328:12: warning: unused variable 'detPrior' [-Wunused-variable]
double detPrior = inverse(var,varInv);
^
Utility_v2.cpp:334:12: warning: unused variable 'detPosterior' [-Wunused-variable]
double detPosterior = 1.0 / inverse(varInv,var);
^
Utility_v2.cpp: In function 'void updateMRF1perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:413:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++) {
^
Utility_v2.cpp:435:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++) {
^
Utility_v2.cpp:447:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (ggg = 0; ggg < neighbour[gene].size(); ggg++) {
^
Utility_v2.cpp: In function 'double perfectMRF1_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:556:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
^
Utility_v2.cpp:600:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = 0; gg < neighbour[g].size(); gg++)
^
Utility_v2.cpp: In function 'void updateMRF2perfect_onedelta(int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, Random&)':
Utility_v2.cpp:635:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
^
Utility_v2.cpp: In function 'double perfectMRF2_onedelta(int*, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, unsigned int*, int)':
Utility_v2.cpp:723:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
^
Utility_v2.cpp:760:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
^
Utility_v2.cpp:764:6: warning: unused variable 'ngg' [-Wunused-variable]
int ngg = neighbour[gg].size();
^
Utility_v2.cpp: In function 'void updateMRF2perfect(int, int, int, int, std::vector<int>&, std::vector<int>&, const std::vector<double>&, const std::vector<double>&, const std::vector<std::vector<int> >&, double, double, double, Random&)':
Utility_v2.cpp:793:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
^
Utility_v2.cpp: In function 'double perfectMRF2(int*, int, int, const std::vector<std::vector<int> >&, const std::vector<double>&, const std::vector<double>&, double, double, double, unsigned int*, int)':
Utility_v2.cpp:904:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (b == start.size() - 1) nextSeed = ran.ChangeSeed(dummy);
^
Utility_v2.cpp:949:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < neighbour[g].size(); k++) {
^
Utility_v2.cpp:954:8: warning: unused variable 'ngg' [-Wunused-variable]
int ngg = neighbour[gg].size();
^
Utility_v2.cpp: In function 'double OmegaGibbs(double, const std::vector<std::vector<std::vector<double> > >&, const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const double*, const double*, const double*, const double*, const double*, std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1027:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g1 = 0; g1 < DNew[0].size(); g1++)
^
Utility_v2.cpp:1028:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g2 = 0; g2 < DNew[0][g1].size(); g2++)
^
Utility_v2.cpp:1036:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 1; k < DNew.size(); k++) {
^
Utility_v2.cpp:1041:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g = 0; g < oldComponents[k].size(); g++) {
^
Utility_v2.cpp:1047:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g = 0; g < cliqueSize - oldComponents[k].size(); g++) {
^
Utility_v2.cpp:1059:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g1 = 0; g1 < DNew[k].size(); g1++)
^
Utility_v2.cpp:1060:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (g2 = 0; g2 < DNew[k][g1].size(); g2++)
^
Utility_v2.cpp: In function 'double DeltaStarGibbs(const std::vector<int>&, const std::vector<std::vector<int> >&, int, int, const int*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const double*, const std::vector<std::vector<std::vector<double> > >&, Random&, int)':
Utility_v2.cpp:1096:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaInv.size(); k++)
^
Utility_v2.cpp:1101:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaSep.size(); k++) {
^
Utility_v2.cpp:1104:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < oldComponents[k].size(); i++) {
^
Utility_v2.cpp:1107:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j = 0; j < oldComponents[k].size(); j++) {
^
Utility_v2.cpp:1115:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaSep.size(); k++) {
^
Utility_v2.cpp:1129:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < Omega.size(); k++) {
^
Utility_v2.cpp:1133:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = 0; gg < oldComponents[k].size(); gg++)
^
Utility_v2.cpp:1135:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (gg = oldComponents[k].size(); gg < Omega[k].size(); gg++) {
^
Utility_v2.cpp:1238:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaInv.size(); k++) {
^
Utility_v2.cpp:1240:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (r = 0; r < nr[k].size(); r++) {
^
Utility_v2.cpp:1242:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (s = 0; s < nr[k].size(); s++) {
^
Utility_v2.cpp:1258:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaSepInv.size(); k++) {
^
Utility_v2.cpp:1260:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (r = 0; r < oldComponents[k].size(); r++) {
^
Utility_v2.cpp:1262:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (s = 0; s < oldComponents[k].size(); s++) {
^
Utility_v2.cpp:1409:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (index = 0; index < L.size(); index++)
^
Utility_v2.cpp:1458:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < VinvSparseReversed.size(); k++)
^
Utility_v2.cpp:1460:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < VinvSparseReversed.size(); k++) {
^
Utility_v2.cpp:1501:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (index = 0; index < cholReversed.size(); index++)
^
Utility_v2.cpp:1563:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < chol.size(); k++)
^
Utility_v2.cpp:1565:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < cholReversed.size(); k++) {
^
Utility_v2.cpp:1600:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < cholT.size(); k++)
^
Utility_v2.cpp:1602:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < chol.size(); i++) {
^
Utility_v2.cpp:1653:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < mean.size(); i++) {
^
Utility_v2.cpp:1693:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < z.size(); k++)
^
Utility_v2.cpp:1713:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < sample.size(); i++) {
^
Utility_v2.cpp:1779:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < sample.size(); i++) {
^
Utility_v2.cpp: In function 'void inverseTransformOmega(const std::vector<std::vector<std::vector<double> > >&, double*)':
Utility_v2.cpp:1875:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < OmegaTransformed.size(); k++) {
^
Utility_v2.cpp:1877:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < OmegaTransformed[k].size(); i++)
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c diffExpressed_main.cpp -o diffExpressed_main.o
In file included from diffExpressed_main.cpp:16:0:
Random.h:19:0: warning: "PI" redefined
#define PI 3.14159265
^
In file included from C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include/R.h:85:0,
from diffExpressed_main.cpp:4:
C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include/R_ext/Constants.h:36:0: note: this is the location of the previous definition
#define PI M_PI
^
In file included from diffExpressed_main.cpp:22:0:
PotentialX.h: In destructor 'virtual PotentialX::˜PotentialX()':
PotentialX.h:44:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
PotentialX.h: In member function 'virtual double PotentialX::potential(Random&) const':
PotentialX.h:64:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from diffExpressed_main.cpp:31:0:
PotentialSigma2.h: In destructor 'virtual PotentialSigma2::˜PotentialSigma2()':
PotentialSigma2.h:44:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
PotentialSigma2.h: In member function 'virtual double PotentialSigma2::potential(Random&) const':
PotentialSigma2.h:64:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from diffExpressed_main.cpp:32:0:
PotentialPhi.h: In destructor 'virtual PotentialPhi::˜PotentialPhi()':
PotentialPhi.h:44:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
PotentialPhi.h: In member function 'virtual double PotentialPhi::potential(Random&) const':
PotentialPhi.h:64:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from diffExpressed_main.cpp:33:0:
PotentialSum.h: In constructor 'PotentialSum::PotentialSum(const std::vector<Potential*>&)':
PotentialSum.h:30:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
PotentialSum.h: In destructor 'virtual PotentialSum::˜PotentialSum()':
PotentialSum.h:41:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
PotentialSum.h: In member function 'virtual double PotentialSum::potential(Random&) const':
PotentialSum.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
In file included from diffExpressed_main.cpp:41:0:
UpdateDeltaMH.h: In constructor 'UpdateDeltaMH::UpdateDeltaMH(Structure*, int)':
UpdateDeltaMH.h:47:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateDeltaMH.h: In destructor 'virtual UpdateDeltaMH::˜UpdateDeltaMH()':
UpdateDeltaMH.h:59:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
In file included from UpdateSigma2MH.h:4:0,
from diffExpressed_main.cpp:43:
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:50:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
UpdateMultiplicativePositive.h:53:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable.size(); i++)
^
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:76:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable.size(); i++)
^
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const std::vector<Potential*>&, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:124:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < model.size(); i++)
^
UpdateMultiplicativePositive.h:127:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
^
UpdateMultiplicativePositive.h:130:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable2.size(); i++)
^
UpdateMultiplicativePositive.h: In constructor 'UpdateMultiplicativePositive::UpdateMultiplicativePositive(const Potential*, const std::vector<double*>&, const std::vector<double*>&, double)':
UpdateMultiplicativePositive.h:159:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
^
UpdateMultiplicativePositive.h:162:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable2.size(); i++)
^
UpdateMultiplicativePositive.h: In member function 'virtual int UpdateMultiplicativePositive::update(Random&)':
UpdateMultiplicativePositive.h:213:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < variable1.size(); i++)
^
In file included from diffExpressed_main.cpp:43:0:
UpdateSigma2MH.h: In constructor 'UpdateSigma2MH::UpdateSigma2MH(Structure*, double)':
UpdateSigma2MH.h:49:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateSigma2MH.h: In destructor 'virtual UpdateSigma2MH::˜UpdateSigma2MH()':
UpdateSigma2MH.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateSigma2MH.h: In member function 'virtual void UpdateSigma2MH::setEpsilon(double)':
UpdateSigma2MH.h:71:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateSigma2MH.h: In member function 'virtual int UpdateSigma2MH::update(Random&)':
UpdateSigma2MH.h:96:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:44:0:
UpdateTMH.h: In constructor 'UpdateTMH::UpdateTMH(Structure*, const Potential*, double)':
UpdateTMH.h:48:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateTMH.h: In destructor 'virtual UpdateTMH::˜UpdateTMH()':
UpdateTMH.h:60:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateTMH.h: In member function 'virtual int UpdateTMH::update(Random&)':
UpdateTMH.h:84:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:45:0:
UpdateLMH.h: In constructor 'UpdateLMH::UpdateLMH(Structure*, const Potential*, double)':
UpdateLMH.h:49:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateLMH.h: In destructor 'virtual UpdateLMH::˜UpdateLMH()':
UpdateLMH.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateLMH.h: In member function 'virtual void UpdateLMH::setEpsilon(double)':
UpdateLMH.h:73:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateLMH.h: In member function 'virtual int UpdateLMH::update(Random&)':
UpdateLMH.h:99:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:46:0:
UpdatePhiMH.h: In constructor 'UpdatePhiMH::UpdatePhiMH(Structure*, double)':
UpdatePhiMH.h:45:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdatePhiMH.h: In destructor 'virtual UpdatePhiMH::˜UpdatePhiMH()':
UpdatePhiMH.h:57:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdatePhiMH.h: In member function 'virtual void UpdatePhiMH::setEpsilon(double)':
UpdatePhiMH.h:69:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdatePhiMH.h: In member function 'virtual int UpdatePhiMH::update(Random&)':
UpdatePhiMH.h:96:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:47:0:
UpdateThetaMH.h: In constructor 'UpdateThetaMH::UpdateThetaMH(Structure*, const Potential*, double)':
UpdateThetaMH.h:49:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateThetaMH.h: In destructor 'virtual UpdateThetaMH::˜UpdateThetaMH()':
UpdateThetaMH.h:61:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateThetaMH.h: In member function 'virtual int UpdateThetaMH::update(Random&)':
UpdateThetaMH.h:85:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:48:0:
UpdateLambdaMH.h: In constructor 'UpdateLambdaMH::UpdateLambdaMH(Structure*, const Potential*, double)':
UpdateLambdaMH.h:47:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
UpdateLambdaMH.h: In destructor 'virtual UpdateLambdaMH::˜UpdateLambdaMH()':
UpdateLambdaMH.h:59:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
UpdateLambdaMH.h: In member function 'virtual int UpdateLambdaMH::update(Random&)':
UpdateLambdaMH.h:83:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < up.size(); i++)
^
In file included from diffExpressed_main.cpp:143:0:
PotentialFunction.h: In function 'void xdeLIN_main(int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*, char**, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*)':
PotentialFunction.h:55:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < term.size(); i++)
^
diffExpressed_main.cpp:202:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < update.size(); k++)
^
diffExpressed_main.cpp:217:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k = 0; k < report.size(); k++)
^
diffExpressed_main.cpp:224:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < report.size(); i++)
^
diffExpressed_main.cpp:227:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (i = 0; i < update.size(); i++)
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c registerDynamicSymbol.c -o registerDynamicSymbol.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o XDE.dll tmp.def Cholesky.o Matrix_v2.o Potential_v2.o Random_v2.o Rinterface_v2.o Structure.o Update_v2.o Utility_v2.o diffExpressed_main.o registerDynamicSymbol.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/XDE.buildbin-libdir/XDE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XDE' as XDE_2.28.0.zip
* DONE (XDE)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'XDE' successfully unpacked and MD5 sums checked
In R CMD INSTALL
