Robert Castelo
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/VariantFiltering |
| Branch: RELEASE_3_8 |
| Last Commit: e217023 |
| Last Changed Date: 2018-10-30 11:41:53 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:57:34 -0400 (Tue, 16 Apr 2019).
| Package 1618/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| VariantFiltering 1.18.0 Robert Castelo
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | ERROR | skipped | skipped |
| Package: VariantFiltering |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL VariantFiltering |
| StartedAt: 2019-04-15 18:44:49 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 18:45:34 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 45.6 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL VariantFiltering ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘VariantFiltering’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Biostrings_stubs.c -o Biostrings_stubs.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_VariantFiltering.c -o R_init_VariantFiltering.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I/usr/local/include -fPIC -Wall -g -O2 -c methods-WeightMatrix.c -o methods-WeightMatrix.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VariantFiltering.so Biostrings_stubs.o R_init_VariantFiltering.o methods-WeightMatrix.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/VariantFiltering/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for 'annotateVariants' with signature 'annObj="MafDb"': no definition for class "MafDb" ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (VariantFiltering)