Package: SparseSignatures

Version: 1.2.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SparseSignatures_1.2.0.tar.gz && rm -rf SparseSignatures.buildbin-libdir && mkdir SparseSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SparseSignatures.buildbin-libdir SparseSignatures_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SparseSignatures_1.2.0.zip && rm SparseSignatures_1.2.0.tar.gz SparseSignatures_1.2.0.zip

StartedAt: 2019-04-12 20:27:53 -0400 (Fri, 12 Apr 2019)

EndedAt: 2019-04-12 20:29:10 -0400 (Fri, 12 Apr 2019)

EllapsedTime: 77.0 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SparseSignatures_1.2.0.tar.gz && rm -rf SparseSignatures.buildbin-libdir && mkdir SparseSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SparseSignatures.buildbin-libdir SparseSignatures_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SparseSignatures_1.2.0.zip && rm SparseSignatures_1.2.0.tar.gz SparseSignatures_1.2.0.zip
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install for i386

* installing *source* package 'SparseSignatures' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SparseSignatures'
    finding HTML links ... done
    as.alpha                                html  
    as.alpha.in.range                       html  
    as.beta                                 html  
    as.beta.in.range                        html  
    as.loglik.progression                   html  
    as.loglik.progression.in.range          html  
    as.mean.squared.error                   html  
    as.starting.beta                        html  
    as.starting.beta.in.range               html  
    background                              html  
    cv_example                              html  
    evaluate.lambda.range                   html  
    import.counts.data                      html  
    lambda_range_example                    html  
    mutation_categories                     html  
    nmf.LassoCV                             html  
    nmf.LassoK                              html  
    nmf_LassoK_example                      html  
    patient.plot                            html  
    patients                                html  
    signatures.plot                         html  
    ssm560_reduced                          html  
    starting.betas.estimation               html  
    starting_betas_example                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'SparseSignatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SparseSignatures' as SparseSignatures_1.2.0.zip
* DONE (SparseSignatures)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'SparseSignatures' successfully unpacked and MD5 sums checked
In R CMD INSTALL