Xiuwen Zheng
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/SeqArray |
| Branch: RELEASE_3_8 |
| Last Commit: 585cb72 |
| Last Changed Date: 2019-03-10 01:42:10 -0400 (Sun, 10 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:49:57 -0400 (Tue, 16 Apr 2019).
| Package 1416/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SeqArray 1.22.6 Xiuwen Zheng
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SeqArray |
| Version: 1.22.6 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL SeqArray |
| StartedAt: 2019-04-15 18:12:40 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 18:13:14 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 34.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL SeqArray
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘SeqArray’ ...
** libs
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ConvToGDS.cpp -o ConvToGDS.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c FileMerge.cpp -o FileMerge.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c GetData.cpp -o GetData.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c Index.cpp -o Index.o
Index.cpp: In member function ‘SeqArray::TSelection::TSampStruct* SeqArray::TSelection::GetStructSample()’:
Index.cpp:658:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (num_samp*numPloidy != num)
^
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c LinkSNPRelate.cpp -o LinkSNPRelate.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c Methods.cpp -o Methods.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c R_SeqArray.c -o R_SeqArray.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ReadBySample.cpp -o ReadBySample.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c ReadByVariant.cpp -o ReadByVariant.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c SeqArray.cpp -o SeqArray.o
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c pkg_test.cpp -o pkg_test.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c samtools_ext.c -o samtools_ext.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I. -DUSING_R -I"/home/biocbuild/bbs-3.8-bioc/R/library/gdsfmt/include" -I/usr/local/include -fpic -g -O2 -Wall -c vectorization.c -o vectorization.o
g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/SeqArray/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SeqArray)