Luca De Sano
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/SIMLR |
| Branch: RELEASE_3_8 |
| Last Commit: b0105de |
| Last Changed Date: 2019-01-04 13:17:51 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:59:58 -0400 (Tue, 16 Apr 2019).
| Package 1453/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SIMLR 1.8.1 Luca De Sano
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: SIMLR |
| Version: 1.8.1 |
| Command: rm -rf SIMLR.buildbin-libdir && mkdir SIMLR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SIMLR_1.8.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SIMLR.buildbin-libdir |
| StartedAt: 2019-04-16 04:45:38 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 04:46:22 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 44.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: SIMLR_1.8.1.tgz |
| PackageFileSize: 4.706 MiB |
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### Running command:
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### rm -rf SIMLR.buildbin-libdir && mkdir SIMLR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SIMLR_1.8.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SIMLR.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SIMLR.buildbin-libdir SIMLR_1.8.1.tar.gz'
>>>>>>>
* installing *source* package ‘SIMLR’ ...
** libs
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c Rtsne.cpp -o Rtsne.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c projsplx_R.c -o projsplx_R.o
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c sptree.cpp -o sptree.o
In file included from sptree.cpp:39:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp.h:27:
In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128:
/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion]
inline void warning(const std::string& message) { // #nocov start
^
1 warning generated.
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c tsne.cpp -o tsne.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SIMLR.so RcppExports.o Rtsne.o projsplx_R.o sptree.o tsne.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/SIMLR.buildbin-libdir/SIMLR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SIMLR)
>>>>>>>
>>>>>>> FIXING LINKS FOR SIMLR.buildbin-libdir/SIMLR/libs//SIMLR.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "SIMLR.buildbin-libdir/SIMLR/libs//SIMLR.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "SIMLR.buildbin-libdir/SIMLR/libs//SIMLR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "SIMLR.buildbin-libdir/SIMLR/libs//SIMLR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "SIMLR.buildbin-libdir/SIMLR/libs//SIMLR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "SIMLR.buildbin-libdir/SIMLR/libs//SIMLR.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "SIMLR.buildbin-libdir/SIMLR/libs//SIMLR.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "SIMLR.buildbin-libdir/SIMLR/libs//SIMLR.so"