Per Broberg,
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/SAGx |
| Branch: RELEASE_3_8 |
| Last Commit: fd6e2d8 |
| Last Changed Date: 2018-10-30 11:41:43 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:20:02 -0400 (Sat, 13 Apr 2019).
| Package 1379/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SAGx 1.56.0 Per Broberg,
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SAGx |
| Version: 1.56.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SAGx_1.56.0.tar.gz && rm -rf SAGx.buildbin-libdir && mkdir SAGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SAGx.buildbin-libdir SAGx_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SAGx_1.56.0.zip && rm SAGx_1.56.0.tar.gz SAGx_1.56.0.zip |
| StartedAt: 2019-04-12 18:45:33 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 18:46:22 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 49.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SAGx_1.56.0.tar.gz && rm -rf SAGx.buildbin-libdir && mkdir SAGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SAGx.buildbin-libdir SAGx_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SAGx_1.56.0.zip && rm SAGx_1.56.0.tar.gz SAGx_1.56.0.zip
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install for i386
* installing *source* package 'SAGx' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c minigsea.c -o minigsea.o
minigsea.c: In function 'MiniGSEA':
minigsea.c:8:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
int i,j,k,I;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c newboot.c -o newboot.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c samrocNboot.c -o samrocNboot.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o SAGx.dll tmp.def minigsea.o newboot.o samrocNboot.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/SAGx.buildbin-libdir/SAGx/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SAGx'
finding HTML links ... done
Fstat html
GSEA.mean.t html
JT.test html
R2BASE html
R2mim html
Xprep html
Xprep.resid html
clin2mim html
cluster.q html
estimatep0 html
fetchSignal html
firstpass html
fom html
fp.fn html
gap html
list.experiments html
list.intersection.p html
mat2TeX html
myclus html
normalise html
one.probeset.per.gene html
outlier html
p0.mom html
pava.fdr html
pava html
rank.genes html
rank.trend html
rsd.test html
samroc.result-class html
samrocn html
samrocnboot html
union.of.pways html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'SAGx' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c minigsea.c -o minigsea.o
minigsea.c: In function 'MiniGSEA':
minigsea.c:8:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
int i,j,k,I;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c newboot.c -o newboot.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c samrocNboot.c -o samrocNboot.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o SAGx.dll tmp.def minigsea.o newboot.o samrocNboot.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/SAGx.buildbin-libdir/SAGx/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SAGx' as SAGx_1.56.0.zip
* DONE (SAGx)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'SAGx' successfully unpacked and MD5 sums checked
In R CMD INSTALL