Martin Morgan
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/RaggedExperiment |
| Branch: RELEASE_3_8 |
| Last Commit: dec7201 |
| Last Changed Date: 2018-10-30 11:42:04 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:27:44 -0400 (Sat, 13 Apr 2019).
| Package 1242/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RaggedExperiment 1.6.0 Martin Morgan
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: RaggedExperiment |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/RaggedExperiment_1.6.0.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.6.0.zip && rm RaggedExperiment_1.6.0.tar.gz RaggedExperiment_1.6.0.zip |
| StartedAt: 2019-04-12 19:40:08 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 19:40:50 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 42.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/RaggedExperiment_1.6.0.tar.gz && rm -rf RaggedExperiment.buildbin-libdir && mkdir RaggedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RaggedExperiment.buildbin-libdir RaggedExperiment_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL RaggedExperiment_1.6.0.zip && rm RaggedExperiment_1.6.0.tar.gz RaggedExperiment_1.6.0.zip
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install for i386
* installing *source* package 'RaggedExperiment' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RaggedExperiment'
finding HTML links ... done
RaggedExperiment-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:104: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:128: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:129: file link 'GAlignmentPairs' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:130: file link 'GAlignmentsList' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:139: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:141: file link 'exonsBy' in package 'GenomicFeatures' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:154: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:159: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:160: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:169: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:397: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpcP2W4w/R.INSTALL15482a3e832/RaggedExperiment/man/RaggedExperiment-class.Rd:411: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
RaggedExperiment-package html
assay-functions html
coerce-functions html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'RaggedExperiment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RaggedExperiment' as RaggedExperiment_1.6.0.zip
* DONE (RaggedExperiment)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'RaggedExperiment' successfully unpacked and MD5 sums checked
In R CMD INSTALL