Mike Jiang
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/RProtoBufLib |
| Branch: RELEASE_3_8 |
| Last Commit: 3b4d6a1 |
| Last Changed Date: 2018-10-30 11:42:05 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 12:00:44 -0400 (Tue, 16 Apr 2019).
| Package 1344/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RProtoBufLib 1.4.0 Mike Jiang
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | WARNINGS | OK | |
| Package: RProtoBufLib |
| Version: 1.4.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RProtoBufLib |
| StartedAt: 2019-04-15 17:57:57 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 17:59:12 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 75.2 seconds |
| RetCode: 0 |
| Status: OK |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RProtoBufLib
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘RProtoBufLib’ ...
checking for gcc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ accepts -g... yes
untarring protobuf ...
building protobuf...
checking whether to enable maintainer-specific portions of Makefiles... yes
checking build system type... x86_64-apple-darwin15.6.0
checking host system type... x86_64-apple-darwin15.6.0
checking target system type... x86_64-apple-darwin15.6.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for gawk... no
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checking whether make sets $(MAKE)... yes
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checking whether the C compiler works... yes
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checking for suffix of executables...
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checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking whether clang understands -c and -o together... rm: conftest.dSYM: is a directory
yes
checking for style of include used by make... GNU
checking dependency style of clang... gcc3
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checking dependency style of clang++... gcc3
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rm: conftest.dSYM: is a directory
yes
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checking the name lister (/usr/bin/nm -B) interface... BSD nm
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checking how to convert x86_64-apple-darwin15.6.0 file names to x86_64-apple-darwin15.6.0 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin15.6.0 file names to toolchain format... func_convert_file_noop
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checking if clang static flag -static works... no
checking if clang supports -c -o file.o... yes
checking if clang supports -c -o file.o... (cached) yes
checking whether the clang linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin15.6.0 dyld
checking how to hardcode library paths into programs... immediate
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checking dynamic linker characteristics... darwin15.6.0 dyld
checking how to hardcode library paths into programs... immediate
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checking zlib version... ok (1.2.0.4 or later)
checking for library containing zlibVersion... -lz
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... -D_THREAD_SAFE
checking whether to check for GCC pthread/shared inconsistencies... no
checking whether what we have so far is sufficient with -nostdlib... no
checking whether -lpthread saves the day... no
configure: WARNING: Impossible to determine how to use pthreads with shared libraries and -nostdlib
checking the location of hash_map... <unordered_map>
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating protobuf.pc
config.status: creating protobuf-lite.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
Making install in .
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
Making install in src
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depbase=`echo google/protobuf/stubs/common.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/stubs/common.lo -MD -MP -MF google/protobuf/stubs/.deps/common.Tpo -c google/protobuf/stubs/common.cc -fno-common -DPIC -o google/protobuf/stubs/common.o
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depbase=`echo google/protobuf/stubs/stringprintf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/stubs/stringprintf.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/stringprintf.lo google/protobuf/stubs/stringprintf.cc &&\
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google/protobuf/stubs/stringprintf.cc:164:59: warning: unused typedef 'arg_count_mismatch' [-Wunused-local-typedef]
GOOGLE_COMPILE_ASSERT(kStringPrintfVectorMaxArgs == 32, arg_count_mismatch);
^
1 warning generated.
depbase=`echo google/protobuf/extension_set.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/extension_set.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/extension_set.lo google/protobuf/extension_set.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/extension_set.lo -MD -MP -MF google/protobuf/.deps/extension_set.Tpo -c google/protobuf/extension_set.cc -fno-common -DPIC -o google/protobuf/extension_set.o
In file included from google/protobuf/extension_set.cc:43:
./google/protobuf/stubs/map_util.h:356:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h:367:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
^
2 warnings generated.
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depbase=`echo google/protobuf/stubs/strutil.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/stubs/strutil.lo -MD -MP -MF google/protobuf/stubs/.deps/strutil.Tpo -c google/protobuf/stubs/strutil.cc -fno-common -DPIC -o google/protobuf/stubs/strutil.o
google/protobuf/stubs/strutil.cc:846:21: warning: unused function 'PlaceNum' [-Wunused-function]
static inline char* PlaceNum(char* p, int num, char prev_sep) {
^
In file included from google/protobuf/stubs/strutil.cc:33:
./google/protobuf/stubs/strutil.h:341:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/strutil.h:347:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_uint64_is_not_sizeof_long_long);
^
google/protobuf/stubs/strutil.cc:1172:39: warning: unused typedef 'DBL_DIG_is_too_big' [-Wunused-local-typedef]
GOOGLE_COMPILE_ASSERT(DBL_DIG < 20, DBL_DIG_is_too_big);
^
google/protobuf/stubs/strutil.cc:1227:39: warning: unused typedef 'FLT_DIG_is_too_big' [-Wunused-local-typedef]
GOOGLE_COMPILE_ASSERT(FLT_DIG < 10, FLT_DIG_is_too_big);
^
5 warnings generated.
depbase=`echo google/protobuf/stubs/substitute.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/stubs/substitute.lo -MD -MP -MF google/protobuf/stubs/.deps/substitute.Tpo -c google/protobuf/stubs/substitute.cc -fno-common -DPIC -o google/protobuf/stubs/substitute.o
In file included from google/protobuf/stubs/substitute.cc:33:
In file included from ./google/protobuf/stubs/substitute.h:36:
./google/protobuf/stubs/strutil.h:341:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/strutil.h:347:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_uint64_is_not_sizeof_long_long);
^
2 warnings generated.
depbase=`echo google/protobuf/stubs/structurally_valid.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/stubs/structurally_valid.lo -MD -MP -MF google/protobuf/stubs/.deps/structurally_valid.Tpo -c google/protobuf/stubs/structurally_valid.cc -fno-common -DPIC -o google/protobuf/stubs/structurally_valid.o
depbase=`echo google/protobuf/descriptor.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/descriptor.lo -MD -MP -MF google/protobuf/.deps/descriptor.Tpo -c google/protobuf/descriptor.cc -fno-common -DPIC -o google/protobuf/descriptor.o
In file included from google/protobuf/descriptor.cc:57:
./google/protobuf/stubs/strutil.h:341:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/strutil.h:347:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_uint64_is_not_sizeof_long_long);
^
In file included from google/protobuf/descriptor.cc:59:
./google/protobuf/stubs/map_util.h:356:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h:367:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
^
4 warnings generated.
depbase=`echo google/protobuf/descriptor.pb.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/descriptor.pb.lo -MD -MP -MF google/protobuf/.deps/descriptor.pb.Tpo -c google/protobuf/descriptor.pb.cc -fno-common -DPIC -o google/protobuf/descriptor.pb.o
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/descriptor_database.lo -MD -MP -MF google/protobuf/.deps/descriptor_database.Tpo -c google/protobuf/descriptor_database.cc -fno-common -DPIC -o google/protobuf/descriptor_database.o
In file included from google/protobuf/descriptor_database.cc:41:
./google/protobuf/stubs/strutil.h:341:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/strutil.h:347:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_uint64_is_not_sizeof_long_long);
^
In file included from google/protobuf/descriptor_database.cc:43:
./google/protobuf/stubs/map_util.h:356:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h:367:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
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4 warnings generated.
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/extension_set_heavy.lo -MD -MP -MF google/protobuf/.deps/extension_set_heavy.Tpo -c google/protobuf/extension_set_heavy.cc -fno-common -DPIC -o google/protobuf/extension_set_heavy.o
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/message.lo -MD -MP -MF google/protobuf/.deps/message.Tpo -c google/protobuf/message.cc -fno-common -DPIC -o google/protobuf/message.o
In file included from google/protobuf/message.cc:50:
./google/protobuf/stubs/strutil.h:341:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/strutil.h:347:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_uint64_is_not_sizeof_long_long);
^
In file included from google/protobuf/message.cc:51:
./google/protobuf/stubs/map_util.h:356:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h:367:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
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4 warnings generated.
depbase=`echo google/protobuf/reflection_ops.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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mv -f $depbase.Tpo $depbase.Plo
libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/reflection_ops.lo -MD -MP -MF google/protobuf/.deps/reflection_ops.Tpo -c google/protobuf/reflection_ops.cc -fno-common -DPIC -o google/protobuf/reflection_ops.o
In file included from google/protobuf/reflection_ops.cc:42:
./google/protobuf/stubs/strutil.h:341:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/strutil.h:347:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_uint64_is_not_sizeof_long_long);
^
2 warnings generated.
depbase=`echo google/protobuf/service.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/service.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/service.lo google/protobuf/service.cc &&\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/service.lo -MD -MP -MF google/protobuf/.deps/service.Tpo -c google/protobuf/service.cc -fno-common -DPIC -o google/protobuf/service.o
depbase=`echo google/protobuf/text_format.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/text_format.lo -MD -MP -MF google/protobuf/.deps/text_format.Tpo -c google/protobuf/text_format.cc -fno-common -DPIC -o google/protobuf/text_format.o
In file included from google/protobuf/text_format.cc:53:
./google/protobuf/stubs/strutil.h:341:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/strutil.h:347:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_uint64_is_not_sizeof_long_long);
^
In file included from google/protobuf/text_format.cc:54:
./google/protobuf/stubs/map_util.h:356:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
^
./google/protobuf/stubs/map_util.h:367:43: warning: unused typedef 'value_type' [-Wunused-local-typedef]
typedef typename Collection::value_type value_type;
^
4 warnings generated.
depbase=`echo google/protobuf/unknown_field_set.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/unknown_field_set.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/unknown_field_set.lo google/protobuf/unknown_field_set.cc &&\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/unknown_field_set.lo -MD -MP -MF google/protobuf/.deps/unknown_field_set.Tpo -c google/protobuf/unknown_field_set.cc -fno-common -DPIC -o google/protobuf/unknown_field_set.o
depbase=`echo google/protobuf/wire_format.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/wire_format.lo -MD -MP -MF google/protobuf/.deps/wire_format.Tpo -c google/protobuf/wire_format.cc -fno-common -DPIC -o google/protobuf/wire_format.o
google/protobuf/wire_format.cc:60:12: warning: unused function 'GetEnumNumber' [-Wunused-function]
inline int GetEnumNumber(const EnumValueDescriptor* descriptor) {
^
1 warning generated.
depbase=`echo google/protobuf/io/gzip_stream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/io/printer.lo -MD -MP -MF google/protobuf/io/.deps/printer.Tpo -c google/protobuf/io/printer.cc -fno-common -DPIC -o google/protobuf/io/printer.o
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/io/strtod.lo -MD -MP -MF google/protobuf/io/.deps/strtod.Tpo -c google/protobuf/io/strtod.cc -fno-common -DPIC -o google/protobuf/io/strtod.o
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/io/tokenizer.lo -MD -MP -MF google/protobuf/io/.deps/tokenizer.Tpo -c google/protobuf/io/tokenizer.cc -fno-common -DPIC -o google/protobuf/io/tokenizer.o
In file included from google/protobuf/io/tokenizer.cc:96:
./google/protobuf/stubs/strutil.h:341:25: warning: unused typedef 'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_int64_is_not_sizeof_long_long);
^
./google/protobuf/stubs/strutil.h:347:25: warning: unused typedef 'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
sizeof_uint64_is_not_sizeof_long_long);
^
2 warnings generated.
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libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -MT google/protobuf/io/zero_copy_stream_impl.lo -MD -MP -MF google/protobuf/io/.deps/zero_copy_stream_impl.Tpo -c google/protobuf/io/zero_copy_stream_impl.cc -fno-common -DPIC -o google/protobuf/io/zero_copy_stream_impl.o
/bin/sh ../libtool --tag=CXX --mode=link clang++ -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -Wall -g -O2 -version-info 9:0:0 -export-dynamic -no-undefined -o libprotobuf.la -rpath /Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib google/protobuf/stubs/atomicops_internals_x86_gcc.lo google/protobuf/stubs/atomicops_internals_x86_msvc.lo google/protobuf/stubs/common.lo google/protobuf/stubs/once.lo google/protobuf/stubs/stringprintf.lo google/protobuf/extension_set.lo google/protobuf/generated_message_util.lo google/protobuf/message_lite.lo google/protobuf/repeated_field.lo google/protobuf/wire_format_lite.lo google/protobuf/io/coded_stream.lo google/protobuf/io/zero_copy_stream.lo google/protobuf/io/zero_copy_stream_impl_lite.lo google/protobuf/stubs/strutil.lo google/protobuf/stubs/substitute.lo google/protobuf/stubs/structurally_valid.lo google/protobuf/descriptor.lo google/protobuf/descriptor.pb.lo google/protobuf/descriptor_database.lo google/protobuf/dynamic_message.lo google/protobuf/extension_set_heavy.lo google/protobuf/generated_message_reflection.lo google/protobuf/message.lo google/protobuf/reflection_ops.lo google/protobuf/service.lo google/protobuf/text_format.lo google/protobuf/unknown_field_set.lo google/protobuf/wire_format.lo google/protobuf/io/gzip_stream.lo google/protobuf/io/printer.lo google/protobuf/io/strtod.lo google/protobuf/io/tokenizer.lo google/protobuf/io/zero_copy_stream_impl.lo -lz
libtool: link: ar cru .libs/libprotobuf.a google/protobuf/stubs/atomicops_internals_x86_gcc.o google/protobuf/stubs/atomicops_internals_x86_msvc.o google/protobuf/stubs/common.o google/protobuf/stubs/once.o google/protobuf/stubs/stringprintf.o google/protobuf/extension_set.o google/protobuf/generated_message_util.o google/protobuf/message_lite.o google/protobuf/repeated_field.o google/protobuf/wire_format_lite.o google/protobuf/io/coded_stream.o google/protobuf/io/zero_copy_stream.o google/protobuf/io/zero_copy_stream_impl_lite.o google/protobuf/stubs/strutil.o google/protobuf/stubs/substitute.o google/protobuf/stubs/structurally_valid.o google/protobuf/descriptor.o google/protobuf/descriptor.pb.o google/protobuf/descriptor_database.o google/protobuf/dynamic_message.o google/protobuf/extension_set_heavy.o google/protobuf/generated_message_reflection.o google/protobuf/message.o google/protobuf/reflection_ops.o google/protobuf/service.o google/protobuf/text_format.o google/protobuf/unknown_field_set.o google/protobuf/wire_format.o google/protobuf/io/gzip_stream.o google/protobuf/io/printer.o google/protobuf/io/strtod.o google/protobuf/io/tokenizer.o google/protobuf/io/zero_copy_stream_impl.o
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libprotobuf.a(atomicops_internals_x86_gcc.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libprotobuf.a(atomicops_internals_x86_msvc.o) has no symbols
libtool: link: ranlib .libs/libprotobuf.a
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libprotobuf.a(atomicops_internals_x86_gcc.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libprotobuf.a(atomicops_internals_x86_msvc.o) has no symbols
libtool: link: ( cd ".libs" && rm -f "libprotobuf.la" && ln -s "../libprotobuf.la" "libprotobuf.la" )
.././install-sh -c -d '/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib'
/bin/sh ../libtool --mode=install /usr/bin/install -c libprotobuf.la '/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib'
libtool: install: /usr/bin/install -c .libs/libprotobuf.lai /Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.la
libtool: install: /usr/bin/install -c .libs/libprotobuf.a /Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.a
libtool: install: chmod 644 /Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.a
libtool: install: ranlib /Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.a
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.a(atomicops_internals_x86_gcc.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib/libprotobuf.a(atomicops_internals_x86_msvc.o) has no symbols
.././install-sh -c -d '/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include'
.././install-sh -c -d '/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs'
/usr/bin/install -c -m 644 google/protobuf/stubs/atomicops.h google/protobuf/stubs/atomicops_internals_arm_gcc.h google/protobuf/stubs/atomicops_internals_arm64_gcc.h google/protobuf/stubs/atomicops_internals_arm_qnx.h google/protobuf/stubs/atomicops_internals_atomicword_compat.h google/protobuf/stubs/atomicops_internals_generic_gcc.h google/protobuf/stubs/atomicops_internals_macosx.h google/protobuf/stubs/atomicops_internals_mips_gcc.h google/protobuf/stubs/atomicops_internals_pnacl.h google/protobuf/stubs/atomicops_internals_tsan.h google/protobuf/stubs/atomicops_internals_x86_gcc.h google/protobuf/stubs/atomicops_internals_x86_msvc.h google/protobuf/stubs/common.h google/protobuf/stubs/platform_macros.h google/protobuf/stubs/once.h google/protobuf/stubs/stl_util.h google/protobuf/stubs/template_util.h google/protobuf/stubs/type_traits.h '/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/stubs'
.././install-sh -c -d '/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io'
/usr/bin/install -c -m 644 google/protobuf/io/coded_stream.h google/protobuf/io/gzip_stream.h google/protobuf/io/printer.h google/protobuf/io/strtod.h google/protobuf/io/tokenizer.h google/protobuf/io/zero_copy_stream.h google/protobuf/io/zero_copy_stream_impl.h google/protobuf/io/zero_copy_stream_impl_lite.h '/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf/io'
.././install-sh -c -d '/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
/usr/bin/install -c -m 644 google/protobuf/descriptor.h google/protobuf/descriptor.pb.h google/protobuf/descriptor_database.h google/protobuf/dynamic_message.h google/protobuf/extension_set.h google/protobuf/generated_enum_reflection.h google/protobuf/generated_message_util.h google/protobuf/generated_message_reflection.h google/protobuf/message.h google/protobuf/message_lite.h google/protobuf/reflection_ops.h google/protobuf/repeated_field.h google/protobuf/service.h google/protobuf/text_format.h google/protobuf/unknown_field_set.h google/protobuf/wire_format.h google/protobuf/wire_format_lite.h google/protobuf/wire_format_lite_inl.h '/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include/google/protobuf'
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include/ -I/usr/local/include -fPIC -Wall -g -O2 -c GatingSet_pb_lib/GatingSet.pb.cc -o GatingSet_pb_lib/GatingSet.pb.o
mkdir -p "/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RProtoBufLib/include"
cp -r /Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include/google /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RProtoBufLib/include
mkdir -p "/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RProtoBufLib/lib/"
cp /Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/lib/* /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RProtoBufLib/lib/
cp GatingSet_pb_lib/GatingSet.pb.o /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RProtoBufLib/lib//GatingSet.pb.o
clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I/Users/biocbuild/bbs-3.8-bioc/meat/RProtoBufLib/src/pb_build/include/ -I/usr/local/include -fPIC -Wall -g -O2 -c dummy.cpp -o dummy.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RProtoBufLib.so dummy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RProtoBufLib/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RProtoBufLib)