Habil Zare
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/Pigengene |
| Branch: RELEASE_3_8 |
| Last Commit: 59ee84d |
| Last Changed Date: 2019-01-04 13:06:36 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:26:45 -0400 (Sat, 13 Apr 2019).
| Package 1160/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Pigengene 1.8.1 Habil Zare
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: Pigengene |
| Version: 1.8.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Pigengene_1.8.1.tar.gz && rm -rf Pigengene.buildbin-libdir && mkdir Pigengene.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pigengene.buildbin-libdir Pigengene_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Pigengene_1.8.1.zip && rm Pigengene_1.8.1.tar.gz Pigengene_1.8.1.zip |
| StartedAt: 2019-04-12 19:28:18 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 19:30:10 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 111.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Pigengene_1.8.1.tar.gz && rm -rf Pigengene.buildbin-libdir && mkdir Pigengene.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pigengene.buildbin-libdir Pigengene_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Pigengene_1.8.1.zip && rm Pigengene_1.8.1.tar.gz Pigengene_1.8.1.zip
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install for i386
* installing *source* package 'Pigengene' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Pigengene'
finding HTML links ... done
Pigengene-package html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/Pigengene-package.Rd:55: missing file link 'WGCNA-package'
aml html
balance html
calculate.beta html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/calculate.beta.Rd:8: missing file link 'WGCNA-package'
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/calculate.beta.Rd:58: missing file link 'WGCNA-package'
check.nas html
check.pigengene.input html
compact.tree html
compute.pigengene html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/compute.pigengene.Rd:74: missing file link 'WGCNA-package'
dcor.matrix html
draw.bn html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/draw.bn.Rd:18: file link 'bn-class' in package 'bnlearn' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/draw.bn.Rd:67: file link 'bn-class' in package 'bnlearn' does not exist and so has been treated as a topic
eigengenes33 html
gene.mapping html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/gene.mapping.Rd:60: file link 'org.Hs.eg.db' in package 'org.Hs.eg.db' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/gene.mapping.Rd:61: file link 'org.Mm.eg.db' in package 'org.Mm.eg.db' does not exist and so has been treated as a topic
get.fitted.leaf html
get.genes html
get.used.features html
learn.bn html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/learn.bn.Rd:99: file link 'discretize' in package 'bnlearn' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/learn.bn.Rd:104: file link 'bn-class' in package 'bnlearn' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/learn.bn.Rd:177: file link 'bn-class' in package 'bnlearn' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/learn.bn.Rd:202: missing file link 'WGCNA-package'
make.decision.tree html
mds html
module.heatmap html
one.step.pigengene html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/one.step.pigengene.Rd:154: missing file link 'WGCNA-package'
pheatmap.type html
pigengene-class html
pigengene html
plot.pigengene html
preds.at html
project.eigen html
pvalues.manova html
wgcna.one.step html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmpmaunpv/R.INSTALLe445d3923ca/Pigengene/man/wgcna.one.step.Rd:83: missing file link 'WGCNA-package'
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Pigengene' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Pigengene' as Pigengene_1.8.1.zip
* DONE (Pigengene)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'Pigengene' successfully unpacked and MD5 sums checked
In R CMD INSTALL