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INSTALL report for PGA on tokay1

This page was generated on 2019-04-13 11:25:36 -0400 (Sat, 13 Apr 2019).

Package 1145/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PGA 1.12.1
Bo Wen , Shaohang Xu
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/PGA
Branch: RELEASE_3_8
Last Commit: 6d3c4b8
Last Changed Date: 2019-01-04 13:06:29 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PGA
Version: 1.12.1
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/PGA_1.12.1.tar.gz && rm -rf PGA.buildbin-libdir && mkdir PGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGA.buildbin-libdir PGA_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL PGA_1.12.1.zip && rm PGA_1.12.1.tar.gz PGA_1.12.1.zip
StartedAt: 2019-04-12 20:06:09 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:07:03 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 53.9 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/PGA_1.12.1.tar.gz && rm -rf PGA.buildbin-libdir && mkdir PGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PGA.buildbin-libdir PGA_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL PGA_1.12.1.zip && rm PGA_1.12.1.tar.gz PGA_1.12.1.zip
###
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100 3988k  100 3988k    0     0  45.2M      0 --:--:-- --:--:-- --:--:-- 47.5M

install for i386

* installing *source* package 'PGA' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PGA'
    finding HTML links ... done
    PrepareAnnotationEnsembl2               html  
    finding level-2 HTML links ... done

    PrepareAnnotationRefseq2                html  
    addGeneName4Ensembl                     html  
    createProDB4DenovoRNASeq                html  
    dbCreator                               html  
    easyRun                                 html  
    parserGear                              html  
    reportGear                              html  
    runTandem                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'PGA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PGA' as PGA_1.12.1.zip
* DONE (PGA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'PGA' successfully unpacked and MD5 sums checked
In R CMD INSTALL