Ramon Diaz-Uriarte
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/OncoSimulR |
| Branch: RELEASE_3_8 |
| Last Commit: 10d3d45 |
| Last Changed Date: 2018-10-30 11:41:54 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:57:49 -0400 (Tue, 16 Apr 2019).
| Package 1090/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OncoSimulR 2.12.0 Ramon Diaz-Uriarte
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: OncoSimulR |
| Version: 2.12.0 |
| Command: rm -rf OncoSimulR.buildbin-libdir && mkdir OncoSimulR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OncoSimulR_2.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R OncoSimulR.buildbin-libdir |
| StartedAt: 2019-04-16 04:28:47 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 04:30:12 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 85.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: OncoSimulR_2.12.0.tgz |
| PackageFileSize: 4.677 MiB |
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### Running command:
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### rm -rf OncoSimulR.buildbin-libdir && mkdir OncoSimulR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh OncoSimulR_2.12.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R OncoSimulR.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=OncoSimulR.buildbin-libdir OncoSimulR_2.12.0.tar.gz'
>>>>>>>
* installing *source* package ‘OncoSimulR’ ...
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BNB_nr.cpp -o BNB_nr.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BNB_v1.cpp -o BNB_v1.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c OncoSimulR_init.c -o OncoSimulR_init.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c accessible_genotypes.cpp -o accessible_genotypes.o
accessible_genotypes.cpp:224:7: warning: unused variable 'numMutdiff' [-Wunused-variable]
int numMutdiff = 0;
^
1 warning generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c bnb_common.cpp -o bnb_common.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c new_restrict.cpp -o new_restrict.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c new_restrict_former_print_utils.cpp -o new_restrict_former_print_utils.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o OncoSimulR.so BNB_nr.o BNB_v1.o OncoSimulR_init.o RcppExports.o accessible_genotypes.o bnb_common.o new_restrict.o new_restrict_former_print_utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/OncoSimulR.buildbin-libdir/OncoSimulR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (OncoSimulR)
>>>>>>>
>>>>>>> FIXING LINKS FOR OncoSimulR.buildbin-libdir/OncoSimulR/libs//OncoSimulR.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "OncoSimulR.buildbin-libdir/OncoSimulR/libs//OncoSimulR.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "OncoSimulR.buildbin-libdir/OncoSimulR/libs//OncoSimulR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "OncoSimulR.buildbin-libdir/OncoSimulR/libs//OncoSimulR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "OncoSimulR.buildbin-libdir/OncoSimulR/libs//OncoSimulR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "OncoSimulR.buildbin-libdir/OncoSimulR/libs//OncoSimulR.so"