Package: MVCClass

Version: 1.56.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MVCClass.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MVCClass_1.56.0.tar.gz

StartedAt: 2019-04-16 01:31:42 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 01:32:05 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 22.3 seconds

RetCode: 0

Status:  OK

CheckDir: MVCClass.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MVCClass.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MVCClass_1.56.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/MVCClass.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MVCClass/DESCRIPTION’ ... OK
* this is package ‘MVCClass’ version ‘1.56.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MVCClass’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘methods’ which was already attached by Depends.
  Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘MVCClass/R/zzz.R’:
  .onLoad calls:
    require("methods")

Package startup functions should not change the search path.
See section ‘Good practice’ in '?.onAttach'.
* checking Rd files ... NOTE
prepare_Rd: MVC-class.Rd:54-55: Dropping empty section \examples
prepare_Rd: dfModel-class.Rd:42-43: Dropping empty section \examples
prepare_Rd: gAddChildMessage-class.Rd:42-43: Dropping empty section \examples
prepare_Rd: gAddDataMessage-class.Rd:42-43: Dropping empty section \examples
prepare_Rd: gAddMessage-class.Rd:37-38: Dropping empty section \examples
prepare_Rd: gAddViewMessage-class.Rd:42-43: Dropping empty section \examples
prepare_Rd: gAskAncestorMessage-class.Rd:62-63: Dropping empty section \examples
prepare_Rd: gEventFun-class.Rd:49-50: Dropping empty section \examples
prepare_Rd: gMessage-class.Rd:32-33: Dropping empty section \examples
prepare_Rd: gModel-class.Rd:71-72: Dropping empty section \examples
prepare_Rd: gModifyMessage-class.Rd:52-53: Dropping empty section \examples
prepare_Rd: gSendChildMessage-class.Rd:58-59: Dropping empty section \examples
prepare_Rd: gSendParentMessage-class.Rd:49-50: Dropping empty section \examples
prepare_Rd: gUpdateDataMessage-class.Rd:51-52: Dropping empty section \examples
prepare_Rd: gUpdateMessage-class.Rd:37-38: Dropping empty section \examples
prepare_Rd: gUpdateViewMessage-class.Rd:43-44: Dropping empty section \examples
prepare_Rd: genView-class.Rd:62-63: Dropping empty section \examples
prepare_Rd: linkedModelMVC-class.Rd:59-60: Dropping empty section \examples
prepare_Rd: plotView-class.Rd:67-68: Dropping empty section \examples
prepare_Rd: qqPlotView-class.Rd:59-60: Dropping empty section \examples
prepare_Rd: sPlotView-class.Rd:69-70: Dropping empty section \examples
prepare_Rd: singleModelMVC-class.Rd:41-42: Dropping empty section \examples
prepare_Rd: spreadView-class.Rd:50-51: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/Users/biocbuild/bbs-3.8-bioc/meat/MVCClass.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL MVCClass
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘MVCClass’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MVCClass)