Minoo Ashtiani
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/IMMAN |
| Branch: RELEASE_3_8 |
| Last Commit: 77fbe7c |
| Last Changed Date: 2018-10-30 11:42:08 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:53:24 -0400 (Tue, 16 Apr 2019).
| Package 768/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IMMAN 1.2.0 Minoo Ashtiani
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: IMMAN |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:IMMAN.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings IMMAN_1.2.0.tar.gz |
| StartedAt: 2019-04-16 00:46:45 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 00:56:15 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 569.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IMMAN.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:IMMAN.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings IMMAN_1.2.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/IMMAN.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMMAN/DESCRIPTION’ ... OK
* this is package ‘IMMAN’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMMAN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
IMMAN: no visible binding for global variable ‘tem’
IMMAN : <anonymous>: no visible binding for global variable ‘tem’
Undefined global functions or variables:
tem
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
IMMAN 142.84 2.012 293.053
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.8-bioc/meat/IMMAN.Rcheck/00check.log’
for details.
IMMAN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL IMMAN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘IMMAN’ ... ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (IMMAN)
IMMAN.Rcheck/tests/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(IMMAN)
>
> test_check("IMMAN")
trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/6239__protein_aliases_tf.tsv.gz'
Content type 'application/x-gzip' length 3866324 bytes (3.7 MB)
==================================================
downloaded 3.7 MB
trying URL 'http://string.uzh.ch/permanent/string/10/proteins/6239__proteins.tsv.gz'
Content type 'application/x-gzip' length 792419 bytes (773 KB)
==================================================
downloaded 773 KB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_aliases/7227__protein_aliases_tf.tsv.gz'
Content type 'application/x-gzip' length 4062637 bytes (3.9 MB)
==================================================
downloaded 3.9 MB
trying URL 'http://string.uzh.ch/permanent/string/10/proteins/7227__proteins.tsv.gz'
Content type 'application/x-gzip' length 648541 bytes (633 KB)
==================================================
downloaded 633 KB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/6239__protein_links.tsv.gz'
Content type 'application/x-gzip' length 26272827 bytes (25.1 MB)
==================================================
downloaded 25.1 MB
trying URL 'http://string.uzh.ch/permanent/string/10/protein_links/7227__protein_links.tsv.gz'
Content type 'application/x-gzip' length 18188738 bytes (17.3 MB)
==================================================
downloaded 17.3 MB
══ testthat results ═══════════════════════════════════════════════════════════
OK: 2 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
105.088 1.640 170.615
IMMAN.Rcheck/IMMAN-Ex.timings
| name | user | system | elapsed | |
| Celegance | 0.020 | 0.000 | 0.031 | |
| FruitFly | 0.004 | 0.000 | 0.005 | |
| H.sapiens | 0.004 | 0.000 | 0.003 | |
| IMMAN | 142.840 | 2.012 | 293.053 | |
| R.norvegicus | 0.004 | 0.000 | 0.005 | |