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This page was generated on 2019-04-16 11:48:40 -0400 (Tue, 16 Apr 2019).
Package 725/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
HilbertVisGUI 1.40.0 Simon Anders
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | [ OK ] | OK | WARNINGS | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | ...NOT SUPPORTED... |
Package: HilbertVisGUI |
Version: 1.40.0 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL HilbertVisGUI |
StartedAt: 2019-04-15 18:02:36 -0400 (Mon, 15 Apr 2019) |
EndedAt: 2019-04-15 18:03:00 -0400 (Mon, 15 Apr 2019) |
EllapsedTime: 24.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL HilbertVisGUI ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘HilbertVisGUI’ ... Checking for pkg-config... /usr/bin/pkg-config Checking for gtkmm-2.4... found: version 2.24.4 ** libs gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -fpic -g -O2 -Wall -c R_env_prot.c -o R_env_prot.o cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C cc1: warning: command line option ‘-std=c++11’ is valid for C++/ObjC++ but not for C g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c R_interface.cc -o R_interface.o In file included from R_interface.cc:10:0: colorizers.h:42:9: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr<DataVector> data; ^ In file included from /usr/include/c++/5/memory:81:0, from /usr/include/glibmm-2.4/glibmm/objectbase.h:32, from /usr/include/glibmm-2.4/glibmm/wrap.h:23, from /usr/include/glibmm-2.4/glibmm/containerhandle_shared.h:26, from /usr/include/glibmm-2.4/glibmm/arrayhandle.h:23, from /usr/include/glibmm-2.4/glibmm.h:91, from /usr/include/gtkmm-2.4/gtkmm.h:87, from display.h:7, from R_interface.cc:8: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^ R_interface.cc: In function ‘SEXPREC* R_display_hilbert(SEXP)’: R_interface.cc:510:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( int i = 0; i < palette_steps->size(); i++ ) ^ R_interface.cc:509:11: warning: unused variable ‘palette_level’ [-Wunused-variable] double palette_level = log( REAL( max_palette_valueR )[ 0 ] ) / log( 10. ) * 4; ^ R_interface.cc: In member function ‘void MainWindowForRForBidir::set_palette_level(double)’: R_interface.cc:702:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for( int i = 0; i < palette_steps->size(); i++ ) ^ R_interface.cc: In member function ‘double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]’: R_interface.cc:160:27: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized] return (double) val / count; ^ R_interface.cc: In member function ‘double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]’: R_interface.cc:219:19: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized] val /= count; ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c colorizers.cc -o colorizers.o In file included from colorizers.cc:1:0: colorizers.h:42:9: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr<DataVector> data; ^ In file included from /usr/include/c++/5/memory:81:0, from colorizers.h:4, from colorizers.cc:1: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c display.cc -o display.o display.cc: In function ‘coord hilbert(long long int, int)’: display.cc:21:46: warning: narrowing conversion of ‘(((long int)c.coord::y) + (1l << (lv + -1)))’ from ‘long int’ to ‘int’ inside { } [-Wnarrowing] case 1: { return (coord) { c.x, c.y + ( 1l << (lv-1) ) }; } ^ display.cc:22:41: warning: narrowing conversion of ‘(((long int)c.coord::x) + (1l << (lv + -1)))’ from ‘long int’ to ‘int’ inside { } [-Wnarrowing] case 2: { return (coord) { c.x + ( 1l << (lv-1) ), c.y + ( 1l << (lv-1) ) }; } ^ display.cc:22:65: warning: narrowing conversion of ‘(((long int)c.coord::y) + (1l << (lv + -1)))’ from ‘long int’ to ‘int’ inside { } [-Wnarrowing] case 2: { return (coord) { c.x + ( 1l << (lv-1) ), c.y + ( 1l << (lv-1) ) }; } ^ display.cc:23:50: warning: narrowing conversion of ‘(((1l << lv) + -1l) - ((long int)c.coord::y))’ from ‘long int’ to ‘int’ inside { } [-Wnarrowing] case 3: { return (coord) { (1l<<lv) - 1 - c.y, ( 1l << (lv-1) ) - 1 - c.x }; } ^ display.cc:23:78: warning: narrowing conversion of ‘(((1l << (lv + -1)) + -1l) - ((long int)c.coord::x))’ from ‘long int’ to ‘int’ inside { } [-Wnarrowing] case 3: { return (coord) { (1l<<lv) - 1 - c.y, ( 1l << (lv-1) ) - 1 - c.x }; } ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c ruler.cc -o ruler.o g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -fpic -g -O2 -Wall -c window.cc -o window.o In file included from window.cc:7:0: colorizers.h:42:9: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr<DataVector> data; ^ In file included from /usr/include/c++/5/memory:81:0, from /usr/include/glibmm-2.4/glibmm/objectbase.h:32, from /usr/include/glibmm-2.4/glibmm/wrap.h:23, from /usr/include/glibmm-2.4/glibmm/containerhandle_shared.h:26, from /usr/include/glibmm-2.4/glibmm/arrayhandle.h:23, from /usr/include/glibmm-2.4/glibmm.h:91, from /usr/include/gtkmm-2.4/gtkmm.h:87, from window.h:5, from window.cc:4: /usr/include/c++/5/bits/unique_ptr.h:49:28: note: declared here template<typename> class auto_ptr; ^ g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o HilbertVisGUI.so R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -lgtkmm-2.4 -latkmm-1.6 -lgtk-x11-2.0 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfontconfig -lfreetype -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.8-bioc/R/library/HilbertVisGUI/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (HilbertVisGUI)