Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-13 11:25:11 -0400 (Sat, 13 Apr 2019).
Package 662/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Siddhartha Bagaria
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: GoogleGenomics |
Version: 2.4.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/GoogleGenomics_2.4.0.tar.gz && rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GoogleGenomics.buildbin-libdir GoogleGenomics_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL GoogleGenomics_2.4.0.zip && rm GoogleGenomics_2.4.0.tar.gz GoogleGenomics_2.4.0.zip |
StartedAt: 2019-04-12 20:03:52 -0400 (Fri, 12 Apr 2019) |
EndedAt: 2019-04-12 20:04:54 -0400 (Fri, 12 Apr 2019) |
EllapsedTime: 62.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/GoogleGenomics_2.4.0.tar.gz && rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GoogleGenomics.buildbin-libdir GoogleGenomics_2.4.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL GoogleGenomics_2.4.0.zip && rm GoogleGenomics_2.4.0.tar.gz GoogleGenomics_2.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 101k 100 101k 0 0 2660k 0 --:--:-- --:--:-- --:--:-- 2989k install for i386 * installing *source* package 'GoogleGenomics' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c init.cc -o init.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GoogleGenomics.dll tmp.def init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GoogleGenomics.buildbin-libdir/GoogleGenomics/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GoogleGenomics' finding HTML links ... done GoogleGenomics html authenticate html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqcdC9X/R.INSTALL23e896d30a7/GoogleGenomics/man/authenticate.Rd:24: file link 'httpuv' in package 'httpuv' does not exist and so has been treated as a topic callGRPCMethod html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqcdC9X/R.INSTALL23e896d30a7/GoogleGenomics/man/callGRPCMethod.Rd:15: file link 'RProtoBuf' in package 'RProtoBuf' does not exist and so has been treated as a topic defaultGcloudCredsPath html getRProtoBufDefaultObject html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqcdC9X/R.INSTALL23e896d30a7/GoogleGenomics/man/getRProtoBufDefaultObject.Rd:6: file link 'RProtoBuf' in package 'RProtoBuf' does not exist and so has been treated as a topic getReads html getReadsPage html getSearchPage html getVariantCalls html getVariants html getVariantsPage html isGRPCAvailable html readsToGAlignments html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqcdC9X/R.INSTALL23e896d30a7/GoogleGenomics/man/readsToGAlignments.Rd:18: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic variantsToGRanges html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqcdC9X/R.INSTALL23e896d30a7/GoogleGenomics/man/variantsToGRanges.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic variantsToVRanges html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpqcdC9X/R.INSTALL23e896d30a7/GoogleGenomics/man/variantsToVRanges.Rd:18: file link 'VRanges' in package 'VariantAnnotation' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded Configured public API key. Warning: Package 'GoogleGenomics' is deprecated and will be removed from Bioconductor version 3.9 In R CMD INSTALL install for x64 * installing *source* package 'GoogleGenomics' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c init.cc -o init.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GoogleGenomics.dll tmp.def init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GoogleGenomics.buildbin-libdir/GoogleGenomics/libs/x64 ** testing if installed package can be loaded Configured public API key. Warning: Package 'GoogleGenomics' is deprecated and will be removed from Bioconductor version 3.9 * MD5 sums packaged installation of 'GoogleGenomics' as GoogleGenomics_2.4.0.zip * DONE (GoogleGenomics) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library' package 'GoogleGenomics' successfully unpacked and MD5 sums checked In R CMD INSTALL