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This page was generated on 2019-03-12 15:33:09 -0400 (Tue, 12 Mar 2019).
Package 662/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
Siddhartha Bagaria
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS |
Package: GoogleGenomics |
Version: 2.4.0 |
Command: rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GoogleGenomics_2.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GoogleGenomics.buildbin-libdir |
StartedAt: 2019-03-12 04:22:44 -0400 (Tue, 12 Mar 2019) |
EndedAt: 2019-03-12 04:23:32 -0400 (Tue, 12 Mar 2019) |
EllapsedTime: 47.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GoogleGenomics_2.4.0.tgz |
PackageFileSize: 849.1 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GoogleGenomics_2.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GoogleGenomics.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GoogleGenomics.buildbin-libdir GoogleGenomics_2.4.0.tar.gz' >>>>>>> * installing *source* package ‘GoogleGenomics’ ... checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking how to run the C++ preprocessor... clang++ -E checking for pkg-config... 0 checking if ProtoBuf version >= 3.0.0... "yes" checking for protoc... /usr/local/bin/protoc checking gRPC... "no" configure: WARNING: " gRPC installation could not be found, or protocol buffer library is not >= 3.0.0. If your installation is in a non-standard location, please see installation instructions at https://github.com/Bioconductor/GoogleGenomics/blob/master/README.rst " configure: creating ./config.status config.status: creating src/Makevars ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fPIC -Wall -g -O2 -c init.cc -o init.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GoogleGenomics.so init.o -L/usr/local/lib -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.8-bioc/meat/GoogleGenomics.buildbin-libdir/GoogleGenomics/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Configured public API key. Warning: Package 'GoogleGenomics' is deprecated and will be removed from Bioconductor version 3.9 * DONE (GoogleGenomics) >>>>>>> >>>>>>> FIXING LINKS FOR GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "GoogleGenomics.buildbin-libdir/GoogleGenomics/libs//GoogleGenomics.so"