Lluís Revilla Sancho
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/BioCor |
| Branch: RELEASE_3_8 |
| Last Commit: 421f8ca |
| Last Changed Date: 2019-02-02 10:35:57 -0400 (Sat, 02 Feb 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:52:40 -0400 (Tue, 16 Apr 2019).
| Package 141/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BioCor 1.6.1 Lluís Revilla Sancho
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BioCor |
| Version: 1.6.1 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:BioCor.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings BioCor_1.6.1.tar.gz |
| StartedAt: 2019-04-15 22:29:05 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 22:31:26 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 140.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BioCor.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:BioCor.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings BioCor_1.6.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/BioCor.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘BioCor/DESCRIPTION’ ... OK * this is package ‘BioCor’ version ‘1.6.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BioCor’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘spelling.R’ Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
BioCor.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL BioCor ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘BioCor’ ... ** R ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘clusterGeneSim’ in package ‘BioCor’ Creating a generic function from function ‘clusterSim’ in package ‘BioCor’ Creating a generic function from function ‘geneSim’ in package ‘BioCor’ Creating a generic function from function ‘mclusterGeneSim’ in package ‘BioCor’ Creating a generic function from function ‘mclusterSim’ in package ‘BioCor’ Creating a generic function from function ‘mgeneSim’ in package ‘BioCor’ Creating a generic function from function ‘mpathSim’ in package ‘BioCor’ Creating a generic function from function ‘pathSim’ in package ‘BioCor’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (BioCor)
BioCor.Rcheck/tests/spelling.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> if(requireNamespace('spelling', quietly=TRUE))
+ spelling::spell_check_test(vignettes = TRUE, error = FALSE, skip_on_cran = TRUE)
NULL
>
> proc.time()
user system elapsed
0.212 0.016 0.255
BioCor.Rcheck/tests/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(BioCor)
If you use BioCor in published research, please cite:
>
> test_check("BioCor")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 322 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
11.504 0.364 11.909
BioCor.Rcheck/BioCor-Ex.timings
| name | user | system | elapsed | |
| AintoB | 0.004 | 0.000 | 0.003 | |
| addSimilarities | 0.008 | 0.000 | 0.008 | |
| clusterGeneSim | 1.396 | 0.036 | 1.435 | |
| clusterSim | 0.792 | 0.008 | 0.799 | |
| combinadic | 0.000 | 0.000 | 0.001 | |
| combineScores | 0.004 | 0.000 | 0.006 | |
| combineSources | 0.000 | 0.000 | 0.002 | |
| conversions | 0 | 0 | 0 | |
| diceSim | 0 | 0 | 0 | |
| duplicateIndices | 0.000 | 0.000 | 0.001 | |
| geneSim | 3.684 | 0.096 | 3.815 | |
| mclusterGeneSim | 0.828 | 0.024 | 0.852 | |
| mclusterSim | 0.904 | 0.000 | 1.035 | |
| mgeneSim | 3.708 | 0.012 | 3.811 | |
| mpathSim | 3.316 | 0.004 | 3.323 | |
| pathSim | 2.492 | 0.012 | 2.507 | |
| removeDup | 0.004 | 0.000 | 0.003 | |
| seq2mat | 0 | 0 | 0 | |
| similarities | 0.004 | 0.000 | 0.003 | |
| weighted | 0.000 | 0.000 | 0.001 | |