Alejandro Quiroz-Zarate
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/BAGS |
| Branch: RELEASE_3_8 |
| Last Commit: ff9fe81 |
| Last Changed Date: 2018-10-30 11:41:48 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:56:13 -0400 (Tue, 16 Apr 2019).
| Package 94/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BAGS 2.22.0 Alejandro Quiroz-Zarate
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: BAGS |
| Version: 2.22.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:BAGS.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings BAGS_2.22.0.tar.gz |
| StartedAt: 2019-04-15 22:28:00 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 22:30:18 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 137.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: BAGS.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:BAGS.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings BAGS_2.22.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/BAGS.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BAGS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BAGS’ version ‘2.22.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BAGS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Gibbs2 57.722 19.135 77.719
MCMCDataSet 15.746 0.654 16.718
DataGeneSets 13.128 0.809 14.085
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.8-bioc/meat/BAGS.Rcheck/00check.log’
for details.
BAGS.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL BAGS
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘BAGS’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:
./FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable]
double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
^
./FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
./FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
./FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable]
double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
^
BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^
BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI;
^
BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^
BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^
BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable]
double formaAux;
^
BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable]
double escala1,escala2,escala3,escala,rate,resI; // Aqui tengo duda
^
32 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BAGS.so BAGS.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/BAGS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BAGS)
BAGS.Rcheck/BAGS-Ex.timings
| name | user | system | elapsed | |
| AnnotationMFGO | 0.034 | 0.006 | 0.040 | |
| BAGS-package | 0.000 | 0.000 | 0.001 | |
| DataGeneSets | 13.128 | 0.809 | 14.085 | |
| Gibbs2 | 57.722 | 19.135 | 77.719 | |
| Gibbs3 | 0 | 0 | 0 | |
| Gibbs4 | 0 | 0 | 0 | |
| Gibbs5 | 0 | 0 | 0 | |
| MCMCDataSet | 15.746 | 0.654 | 16.718 | |
| ReadGMT | 0.001 | 0.001 | 0.000 | |