Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-13 11:23:16 -0400 (Sat, 13 Apr 2019).
Package 39/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
AllelicImbalance 1.20.0 Jesper R Gadin
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: AllelicImbalance |
Version: 1.20.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/AllelicImbalance_1.20.0.tar.gz && rm -rf AllelicImbalance.buildbin-libdir && mkdir AllelicImbalance.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AllelicImbalance.buildbin-libdir AllelicImbalance_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL AllelicImbalance_1.20.0.zip && rm AllelicImbalance_1.20.0.tar.gz AllelicImbalance_1.20.0.zip |
StartedAt: 2019-04-12 20:21:46 -0400 (Fri, 12 Apr 2019) |
EndedAt: 2019-04-12 20:24:31 -0400 (Fri, 12 Apr 2019) |
EllapsedTime: 164.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/AllelicImbalance_1.20.0.tar.gz && rm -rf AllelicImbalance.buildbin-libdir && mkdir AllelicImbalance.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AllelicImbalance.buildbin-libdir AllelicImbalance_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL AllelicImbalance_1.20.0.zip && rm AllelicImbalance_1.20.0.tar.gz AllelicImbalance_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 570k 100 570k 0 0 12.7M 0 --:--:-- --:--:-- --:--:-- 13.9M install for i386 * installing *source* package 'AllelicImbalance' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chisq.test' from package 'stats' in package 'AllelicImbalance' Creating a generic function for 'binom.test' from package 'stats' in package 'AllelicImbalance' ** help *** installing help indices converting help for package 'AllelicImbalance' finding HTML links ... done ASEset-barplot html ASEset-class html ASEset-filters html ASEset-gbarplot html ASEset-glocationplot html ASEset-gviztrack html ASEset-scanForHeterozygotes html ASEset.old html ASEset.sim html ASEsetFromBam html AllelicImbalance-package html DetectedAI-class html DetectedAI-plot html DetectedAI-summary html GRvariants html GlobalAnalysis-class html LinkVariantAlmlof-class html LinkVariantAlmlof-plot html RegionSummary-class html RiskVariant-class html annotation-wrappers html annotationBarplot html barplot-lattice-support html binom.test html chisq.test html cigar-utilities html countAllelesFromBam html coverageMatrixListFromGAL html decorateWithExons html decorateWithGenes html defaultMapBias html defaultPhase html detectAI html fractionPlotDf html gba html genomatrix html genotype2phase html getAlleleCounts html getAlleleQuality html getAreaFromGeneNames html getDefaultMapBiasExpMean html getSnpIdFromLocation html histplot html implodeList-old html import-bam-2 html import-bam html import-bcf html inferAlleles html inferAltAllele html inferGenotypes html initialize-ASEset html initialize-DetectedAI html initialize-GlobalAnalysis html initialize-RiskVariant html legendBarplot html locationplot html lva html lva.internal html makeMaskedFasta html mapBiasRef html minCountFilt html minFreqFilt html multiAllelicFilt html phase2genotype html phaseArray2phaseMatrix html phaseMatrix2Array html randomRef html reads html refAllele html regionSummary html scanForHeterozygotes-old html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'AllelicImbalance' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'AllelicImbalance' as AllelicImbalance_1.20.0.zip * DONE (AllelicImbalance) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library' package 'AllelicImbalance' successfully unpacked and MD5 sums checked In R CMD INSTALL