Johannes Waage
| Snapshot Date: 2018-04-29 16:46:14 -0400 (Sun, 29 Apr 2018) |
| URL: https://git.bioconductor.org/packages/spliceR |
| Branch: master |
| Last Commit: 5e21241 |
| Last Changed Date: 2018-03-06 09:27:25 -0400 (Tue, 06 Mar 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2018-04-30 09:54:33 -0400 (Mon, 30 Apr 2018).
| Package 1413/1559 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Johannes Waage
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | |
| Package: spliceR |
| Version: 1.21.1 |
| Command: rm -rf spliceR.buildbin-libdir && mkdir spliceR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh spliceR_1.21.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R spliceR.buildbin-libdir |
| StartedAt: 2018-04-30 04:02:03 -0400 (Mon, 30 Apr 2018) |
| EndedAt: 2018-04-30 04:02:47 -0400 (Mon, 30 Apr 2018) |
| EllapsedTime: 43.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: spliceR_1.21.1.tgz |
| PackageFileSize: 489.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf spliceR.buildbin-libdir && mkdir spliceR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh spliceR_1.21.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R spliceR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=spliceR.buildbin-libdir spliceR_1.21.1.tar.gz' >>>>>>> * installing *source* package ‘spliceR’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c utils.c -o utils.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o spliceR.so utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.8-bioc/meat/spliceR.buildbin-libdir/spliceR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning: Package 'spliceR' is deprecated and will be removed from Bioconductor version 3.7 . Functionalities moved to IsoformSwitchAnalyzeR * DONE (spliceR) >>>>>>> >>>>>>> FIXING LINKS FOR spliceR.buildbin-libdir/spliceR/libs//spliceR.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "spliceR.buildbin-libdir/spliceR/libs//spliceR.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "spliceR.buildbin-libdir/spliceR/libs//spliceR.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "spliceR.buildbin-libdir/spliceR/libs//spliceR.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "spliceR.buildbin-libdir/spliceR/libs//spliceR.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "spliceR.buildbin-libdir/spliceR/libs//spliceR.so"