Package: sampleClassifier

Version: 1.6.1

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:sampleClassifier.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings sampleClassifier_1.6.1.tar.gz

StartedAt: 2019-04-16 02:52:08 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 02:56:46 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 278.1 seconds

RetCode: 0

Status:  OK

CheckDir: sampleClassifier.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:sampleClassifier.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings sampleClassifier_1.6.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/sampleClassifier.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sampleClassifier/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sampleClassifier’ version ‘1.6.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sampleClassifier’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                             user system elapsed
classifyProfile.rnaseq     72.240  0.272  72.707
classifyProfile            36.100  0.496  36.733
classifyProfile.svm        28.664  0.108  28.826
get.heatmap                26.892  0.088  27.006
classifyProfile.rnaseq.svm 16.452  0.064  16.533
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL sampleClassifier
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘sampleClassifier’ ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (sampleClassifier)

name	user	system	elapsed
classifyProfile	36.100	0.496	36.733
classifyProfile.rnaseq	72.240	0.272	72.707
classifyProfile.rnaseq.svm	16.452	0.064	16.533
classifyProfile.svm	28.664	0.108	28.826
get.heatmap	26.892	0.088	27.006
sampleClassifier-package	0	0	0