Aedin Culhane
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/iBBiG |
| Branch: RELEASE_3_8 |
| Last Commit: 36376ef |
| Last Changed Date: 2018-10-30 11:41:49 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:56:19 -0400 (Tue, 16 Apr 2019).
| Package 745/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| iBBiG 1.26.0 Aedin Culhane
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: iBBiG |
| Version: 1.26.0 |
| Command: rm -rf iBBiG.buildbin-libdir && mkdir iBBiG.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iBBiG_1.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iBBiG.buildbin-libdir |
| StartedAt: 2019-04-16 04:13:17 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 04:14:00 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 43.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: iBBiG_1.26.0.tgz |
| PackageFileSize: 1.046 MiB |
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### Running command:
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### rm -rf iBBiG.buildbin-libdir && mkdir iBBiG.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iBBiG_1.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iBBiG.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iBBiG.buildbin-libdir iBBiG_1.26.0.tar.gz'
>>>>>>>
* installing *source* package ‘iBBiG’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_iBBiG.c -o R_init_iBBiG.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c iBBiG.c -o iBBiG.o
iBBiG.c:300:22: warning: implicit declaration of function 'time' is invalid in C99 [-Wimplicit-function-declaration]
srand((unsigned)time(NULL));
^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iBBiG.so R_init_iBBiG.o iBBiG.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/iBBiG.buildbin-libdir/iBBiG/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iBBiG)
>>>>>>>
>>>>>>> FIXING LINKS FOR iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "iBBiG.buildbin-libdir/iBBiG/libs//iBBiG.so"