Diana Low
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/SPLINTER |
| Branch: RELEASE_3_8 |
| Last Commit: c0320af |
| Last Changed Date: 2019-01-04 13:51:24 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:27:08 -0400 (Sat, 13 Apr 2019).
| Package 1496/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SPLINTER 1.8.1 Diana Low
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | NA | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SPLINTER |
| Version: 1.8.1 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SPLINTER.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings SPLINTER_1.8.1.tar.gz |
| StartedAt: 2019-04-13 05:43:14 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 05:50:27 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 432.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: SPLINTER.Rcheck |
| Warnings: 1 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SPLINTER.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings SPLINTER_1.8.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/SPLINTER.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SPLINTER/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SPLINTER' version '1.8.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SPLINTER' can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
See 'C:/Users/biocbuild/bbs-3.8-bioc/meat/SPLINTER.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
eventPlot 8.64 0.33 9.61
getPCRsizes 5.00 0.18 5.19
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
eventPlot 10.26 0.04 10.31
addEnsemblAnnotation 0.30 0.00 5.70
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/SPLINTER.Rcheck/00check.log'
for details.
SPLINTER.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/SPLINTER_1.8.1.tar.gz && rm -rf SPLINTER.buildbin-libdir && mkdir SPLINTER.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPLINTER.buildbin-libdir SPLINTER_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL SPLINTER_1.8.1.zip && rm SPLINTER_1.8.1.tar.gz SPLINTER_1.8.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
15 803k 15 128k 0 0 2931k 0 --:--:-- --:--:-- --:--:-- 3121k
100 803k 100 803k 0 0 11.1M 0 --:--:-- --:--:-- --:--:-- 11.7M
install for i386
* installing *source* package 'SPLINTER' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
** help
*** installing help indices
converting help for package 'SPLINTER'
finding HTML links ... done
acceptor.m html
addEnsemblAnnotation html
annotateEvents html
callPrimer3 html
checkPrimer html
compatible_cds html
compatible_tx html
donor.m html
eventOutcomeCompare html
eventOutcomeTranslate html
eventPlot html
extendROI html
extractSpliceEvents html
extractSpliceSites html
findCompatibleEvents html
findCompatibleExon html
findExactOverlaps html
findTX html
findTermination html
getPCRsizes html
getRegionDNA html
insertRegion html
makeROI html
makeUniqueIDs html
matchExons html
metaremove html
pcr_result1 html
plot_seqlogo html
primers html
psiPlot html
region_minus_exon html
removeRegion html
remvalue html
roi html
shapiroAcceptor html
shapiroDensity html
shapiroDonor html
splice_data html
splice_fasta html
splitPCRhit html
thecds html
theexons html
valid_cds html
valid_tx html
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
In R CMD INSTALL
install for x64
* installing *source* package 'SPLINTER' ...
** testing if installed package can be loaded
Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis'
Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER'
* MD5 sums
packaged installation of 'SPLINTER' as SPLINTER_1.8.1.zip
* DONE (SPLINTER)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'SPLINTER' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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SPLINTER.Rcheck/examples_i386/SPLINTER-Ex.timings
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SPLINTER.Rcheck/examples_x64/SPLINTER-Ex.timings
|