Stefano de Pretis
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/LowMACA |
| Branch: RELEASE_3_8 |
| Last Commit: c58adb1 |
| Last Changed Date: 2019-03-08 13:26:16 -0400 (Fri, 08 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:58:28 -0400 (Tue, 16 Apr 2019).
| Package 848/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.12.1 Stefano de Pretis
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: LowMACA |
| Version: 1.12.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LowMACA_1.12.1.tar.gz |
| StartedAt: 2019-04-16 00:55:22 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 01:08:06 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 763.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: LowMACA.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LowMACA_1.12.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/LowMACA.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LowMACA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LowMACA’ version ‘1.12.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LowMACA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
allPfamAnalysis 172.775 4.854 179.634
lfmSingleSequence 93.994 2.229 97.385
setup 21.062 48.324 103.705
alignSequences 17.517 46.761 46.401
LowMACA-class 11.571 1.593 40.143
LowMACA-package 9.085 1.081 25.916
lmPlotSingleSequence 5.589 0.772 6.627
getMutations 1.018 0.071 9.666
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
LowMACA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL LowMACA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘LowMACA’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... * DONE (LowMACA)
LowMACA.Rcheck/LowMACA-Ex.timings
| name | user | system | elapsed | |
| BLOSUM62 | 0.008 | 0.002 | 0.009 | |
| LowMACA-class | 11.571 | 1.593 | 40.143 | |
| LowMACA-package | 9.085 | 1.081 | 25.916 | |
| LowMACA_AML | 0.025 | 0.012 | 0.036 | |
| alignSequences | 17.517 | 46.761 | 46.401 | |
| allPfamAnalysis | 172.775 | 4.854 | 179.634 | |
| bpAll | 1.223 | 0.038 | 1.273 | |
| entropy | 1.119 | 0.031 | 1.155 | |
| getMutations | 1.018 | 0.071 | 9.666 | |
| lfm | 2.123 | 0.077 | 2.216 | |
| lfmSingleSequence | 93.994 | 2.229 | 97.385 | |
| lmAlignment | 0.051 | 0.010 | 0.060 | |
| lmEntropy | 1.219 | 0.058 | 1.280 | |
| lmMutations | 0.050 | 0.009 | 0.058 | |
| lmObj | 0.124 | 0.013 | 0.139 | |
| lmParams | 0.596 | 0.030 | 0.633 | |
| lmPlot | 1.736 | 0.048 | 1.796 | |
| lmPlotSingleSequence | 5.589 | 0.772 | 6.627 | |
| mapMutations | 0.576 | 0.017 | 0.597 | |
| newLowMACA | 2.983 | 0.060 | 3.074 | |
| nullProfile | 1.149 | 0.034 | 1.202 | |
| parallelize | 0.716 | 0.023 | 0.742 | |
| protter | 1.209 | 0.046 | 3.779 | |
| setup | 21.062 | 48.324 | 103.705 | |
| showTumorType | 0.069 | 0.013 | 0.315 | |