Joern P. Meier
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/GraphAlignment |
| Branch: RELEASE_3_8 |
| Last Commit: 3de4130 |
| Last Changed Date: 2018-10-30 11:41:44 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:48:31 -0400 (Tue, 16 Apr 2019).
| Package 679/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GraphAlignment 1.46.0 Joern P. Meier
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GraphAlignment |
| Version: 1.46.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL GraphAlignment |
| StartedAt: 2019-04-15 17:57:20 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 17:57:27 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 6.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL GraphAlignment
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘GraphAlignment’ ...
** libs
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GA_alloc.c -o GA_alloc.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GA_matrix.c -o GA_matrix.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GA_matrix_R.c -o GA_matrix_R.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GA_message.c -o GA_message.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GA_vector.c -o GA_vector.o
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GA_vector_R.c -o GA_vector_R.o
GA_vector_R.c: In function ‘GA_clamp_mode_from_R’:
GA_vector_R.c:139:9: warning: unused variable ‘size’ [-Wunused-variable]
int size = LENGTH(robj);
^
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GraphAlignment.c -o GraphAlignment.o
GraphAlignment.c: In function ‘GA_encode_directed_graph’:
GraphAlignment.c:138:20: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wparentheses]
if (matrix->elts[i][j] == 1)
^
GraphAlignment.c:159:20: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wparentheses]
if (matrix->elts[i][j] == 1)
^
GraphAlignment.c: In function ‘GA_directed_mode_from_R’:
GraphAlignment.c:264:9: warning: unused variable ‘size’ [-Wunused-variable]
int size = LENGTH(robj);
^
gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c lap.c -o lap.o
lap.c: In function ‘LAP_checklap’:
lap.c:348:9: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]
scanf("%c", &wait);
^
lap.c:358:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]
scanf("%c", &wait);
^
lap.c:371:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]
scanf("%c", &wait);
^
lap.c:384:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]
scanf("%c", &wait);
^
lap.c:394:7: warning: ignoring return value of ‘scanf’, declared with attribute warn_unused_result [-Wunused-result]
scanf("%c", &wait);
^
lap.c: In function ‘LAP_lap’:
lap.c:64:30: warning: ‘last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
col j, j1, j2, endofpath, last, low, up, *collist, *matches;
^
lap.c:260:11: warning: ‘min’ may be used uninitialized in this function [-Wmaybe-uninitialized]
h = assigncost[i][j1] - v[j1] - min;
^
gcc -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o GraphAlignment.so GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.8-bioc/R/library/GraphAlignment/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GraphAlignment)