Gaëlle Lefort
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ASICS |
| Branch: RELEASE_3_8 |
| Last Commit: 1d8644d |
| Last Changed Date: 2018-10-30 11:42:08 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:53:24 -0400 (Tue, 16 Apr 2019).
| Package 81/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ASICS 1.2.0 Gaëlle Lefort
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ASICS |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ASICS.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ASICS_1.2.0.tar.gz |
| StartedAt: 2019-04-15 22:16:23 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 22:24:08 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 464.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASICS.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ASICS.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ASICS_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/ASICS.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ASICS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ASICS’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ASICS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ASICS 33.160 0.264 33.479
createPureLibrary 12.092 0.016 12.162
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASICS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL ASICS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘ASICS’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘ASICS.Rmd’ using ‘UTF-8’ ‘ASICSUsersGuide.Rmd’ using ‘UTF-8’ ** testing if installed package can be loaded * DONE (ASICS)
ASICS.Rcheck/tests/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ASICS)
>
> test_check("ASICS")
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══ testthat results ═══════════════════════════════════════════════════════════
OK: 21 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
247.228 6.860 255.208
ASICS.Rcheck/ASICS-Ex.timings
| name | user | system | elapsed | |
| ASICS | 33.160 | 0.264 | 33.479 | |
| ASICSUsersGuide | 0.000 | 0.000 | 0.001 | |
| accessors-methods | 0.056 | 0.012 | 0.067 | |
| alignment | 2.972 | 0.036 | 3.020 | |
| baselineCorrection | 1.148 | 0.000 | 1.154 | |
| binning | 0.32 | 0.00 | 0.32 | |
| combineAndSubset-methods | 0.012 | 0.004 | 0.017 | |
| createPureLibrary | 12.092 | 0.016 | 12.162 | |
| createSpectra | 3.528 | 0.000 | 3.551 | |
| formatForAnalysis | 1.084 | 0.000 | 1.123 | |
| importSpectraBruker | 2.788 | 0.000 | 2.801 | |
| kruskalWallis | 0.496 | 0.000 | 0.497 | |
| normalisation | 0.052 | 0.000 | 0.056 | |
| oplsda | 0.164 | 0.000 | 0.167 | |
| pca | 0.524 | 0.000 | 0.522 | |
| summary-methods | 0.036 | 0.000 | 0.036 | |
| visualisation-methods-analyses | 1.62 | 0.00 | 1.62 | |
| visualisation-methods-spectra | 4.24 | 0.02 | 4.26 | |