Bioconductor Package Maintainer
| Snapshot Date: 2018-03-28 07:35:02 -0400 (Wed, 28 Mar 2018) |
| URL: https://git.bioconductor.org/packages/testproj |
| Branch: master |
| Last Commit: d8a2020 |
| Last Changed Date: 2018-01-30 04:20:15 -0400 (Tue, 30 Jan 2018) |
| Back to Workflows build report for BioC 3.7 |
This page was generated on 2018-03-28 12:45:28 -0400 (Wed, 28 Mar 2018).
| Package 20/21 | Hostname | OS / Arch | INSTALL | BUILD | BUILD WEB VIG | ||||||
| testproj 0.0.99 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: testproj |
| Version: 0.0.99 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testfile.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testfile.Rmd", ".buildwebvig/testproj/testfile.R")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testproj.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testproj.Rmd", ".buildwebvig/testproj/testproj.R")' |
| StartedAt: 2018-03-28 08:19:28 -0400 (Wed, 28 Mar 2018) |
| EndedAt: 2018-03-28 08:19:39 -0400 (Wed, 28 Mar 2018) |
| EllapsedTime: 11.5 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testfile.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testfile.Rmd", ".buildwebvig/testproj/testfile.R")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/testproj/testproj.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/testproj/testproj.Rmd", ".buildwebvig/testproj/testproj.R")'
###
##############################################################################
##############################################################################
> rmarkdown::render(".buildwebvig/testproj/testfile.Rmd", output_format="BiocStyle:::html_fragment")
processing file: testfile.Rmd
|
| | 0%
|
|.... | 6%
inline R code fragments
|
|........ | 12%
label: macro (with options)
List of 1
$ echo: logi FALSE
|
|............ | 18%
inline R code fragments
|
|................ | 24%
label: no-cap
|
|..................... | 29%
inline R code fragments
|
|......................... | 35%
label: plot (with options)
List of 2
$ fig.cap: chr "Regular figure. The first sentence of the figure caption is automatically emphasized to serve as figure title."
$ echo : logi FALSE
|
|............................. | 41%
ordinary text without R code
|
|................................. | 47%
label: wide (with options)
List of 3
$ fig.cap : chr "Wide figure. A plot produced by a code chunk with option `fig.wide = TRUE`."
$ fig.wide: logi TRUE
$ echo : logi FALSE
|
|..................................... | 53%
ordinary text without R code
|
|......................................... | 59%
label: small (with options)
List of 3
$ fig.cap : chr "Small figure. A plot produced by a code chunk with option `fig.small = TRUE`."
$ fig.small: logi TRUE
$ echo : logi FALSE
|
|............................................. | 65%
ordinary text without R code
|
|................................................. | 71%
label: mtcars
|
|...................................................... | 76%
ordinary text without R code
|
|.......................................................... | 82%
label: mtcars2
|
|.............................................................. | 88%
ordinary text without R code
|
|.................................................................. | 94%
label: sessionInfo (with options)
List of 1
$ echo: logi FALSE
|
|......................................................................| 100%
ordinary text without R code
output file: testfile.knit.md
/usr/bin/pandoc +RTS -K512m -RTS testfile.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output testfile.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --include-in-header /tmp/RtmpkzdVjK/rmarkdown-str678c308ce9e4.html --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
Output created: testfile.html
Warning message:
The label(s) non-existing-label not found
>
>
> knitr::purl(".buildwebvig/testproj/testfile.Rmd", ".buildwebvig/testproj/testfile.R")
processing file: .buildwebvig/testproj/testfile.Rmd
|
| | 0%
|
|.... | 6%
|
|........ | 12%
|
|........... | 18%
|
|............... | 24%
|
|................... | 29%
|
|....................... | 35%
|
|........................... | 41%
|
|............................... | 47%
|
|.................................. | 53%
|
|...................................... | 59%
|
|.......................................... | 65%
|
|.............................................. | 71%
|
|.................................................. | 76%
|
|...................................................... | 82%
|
|......................................................... | 88%
|
|............................................................. | 94%
|
|.................................................................| 100%
output file: .buildwebvig/testproj/testfile.R
[1] ".buildwebvig/testproj/testfile.R"
>
>
> rmarkdown::render(".buildwebvig/testproj/testproj.Rmd", output_format="BiocStyle:::html_fragment")
processing file: testproj.Rmd
|
| | 0%
|
|.... | 6%
inline R code fragments
|
|........ | 12%
label: macro (with options)
List of 1
$ echo: logi FALSE
|
|............ | 18%
inline R code fragments
|
|................ | 24%
label: no-cap
|
|..................... | 29%
inline R code fragments
|
|......................... | 35%
label: plot (with options)
List of 2
$ fig.cap: chr "Regular figure. The first sentence of the figure caption is automatically emphasized to serve as figure title."
$ echo : logi FALSE
|
|............................. | 41%
ordinary text without R code
|
|................................. | 47%
label: wide (with options)
List of 3
$ fig.cap : chr "Wide figure. A plot produced by a code chunk with option `fig.wide = TRUE`."
$ fig.wide: logi TRUE
$ echo : logi FALSE
|
|..................................... | 53%
ordinary text without R code
|
|......................................... | 59%
label: small (with options)
List of 3
$ fig.cap : chr "Small figure. A plot produced by a code chunk with option `fig.small = TRUE`."
$ fig.small: logi TRUE
$ echo : logi FALSE
|
|............................................. | 65%
ordinary text without R code
|
|................................................. | 71%
label: mtcars
|
|...................................................... | 76%
ordinary text without R code
|
|.......................................................... | 82%
label: mtcars2
|
|.............................................................. | 88%
ordinary text without R code
|
|.................................................................. | 94%
label: sessionInfo (with options)
List of 1
$ echo: logi FALSE
|
|......................................................................| 100%
ordinary text without R code
output file: testproj.knit.md
/usr/bin/pandoc +RTS -K512m -RTS testproj.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output testproj.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --include-in-header /tmp/RtmpyIDyjV/rmarkdown-str6902f3cc767.html --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
Output created: testproj.html
Warning message:
The label(s) non-existing-label not found
>
>
> knitr::purl(".buildwebvig/testproj/testproj.Rmd", ".buildwebvig/testproj/testproj.R")
processing file: .buildwebvig/testproj/testproj.Rmd
|
| | 0%
|
|.... | 6%
|
|........ | 12%
|
|........... | 18%
|
|............... | 24%
|
|................... | 29%
|
|....................... | 35%
|
|........................... | 41%
|
|............................... | 47%
|
|.................................. | 53%
|
|...................................... | 59%
|
|.......................................... | 65%
|
|.............................................. | 71%
|
|.................................................. | 76%
|
|...................................................... | 82%
|
|......................................................... | 88%
|
|............................................................. | 94%
|
|.................................................................| 100%
output file: .buildwebvig/testproj/testproj.R
[1] ".buildwebvig/testproj/testproj.R"
>
>