Vincent Carey
| Snapshot Date: 2018-02-28 12:11:02 -0500 (Wed, 28 Feb 2018) |
| URL: https://git.bioconductor.org/packages/eQTL |
| Branch: master |
| Last Commit: 2472f26 |
| Last Changed Date: 2017-10-19 12:17:57 -0500 (Thu, 19 Oct 2017) |
| Back to Workflows build report for BioC 3.7 |
This page was generated on 2018-02-28 12:45:06 -0500 (Wed, 28 Feb 2018).
| Package 6/6 | Hostname | OS / Arch | INSTALL | BUILD | BUILD VIG | ||||||
| eQTL 1.0.5 Vincent Carey
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: eQTL |
| Version: 1.0.5 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildvig/eQTL/cloudeqtl.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildvig/eQTL/cloudeqtl.Rmd", ".buildvig/eQTL/cloudeqtl.R")' |
| StartedAt: 2018-02-28 12:31:21 -0500 (Wed, 28 Feb 2018) |
| EndedAt: 2018-02-28 12:34:30 -0500 (Wed, 28 Feb 2018) |
| EllapsedTime: 189.1 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildvig/eQTL/cloudeqtl.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildvig/eQTL/cloudeqtl.Rmd", ".buildvig/eQTL/cloudeqtl.R")'
###
##############################################################################
##############################################################################
> rmarkdown::render(".buildvig/eQTL/cloudeqtl.Rmd", output_format="BiocStyle:::html_fragment")
processing file: cloudeqtl.Rmd
|
| | 0%
|
|. | 2%
ordinary text without R code
|
|... | 4%
label: unnamed-chunk-1 (with options)
List of 2
$ echo : logi FALSE
$ results: chr "hide"
|
|.... | 6%
label: unnamed-chunk-2 (with options)
List of 2
$ echo : logi FALSE
$ results: chr "hide"
|
|...... | 8%
inline R code fragments
|
|....... | 10%
label: dolo (with options)
List of 1
$ echo: logi FALSE
|
|......... | 12%
label: lkex (with options)
List of 1
$ eval: logi FALSE
|
|.......... | 14%
ordinary text without R code
|
|........... | 16%
label: lookf1 (with options)
List of 1
$ echo: logi TRUE
|
|............. | 18%
inline R code fragments
|
|.............. | 20%
label: demoy (with options)
List of 5
$ fig : logi TRUE
$ fig.width : num 7
$ fig.height: num 4
$ echo : logi FALSE
$ results : chr "hide"
|
|................ | 22%
label: shoit (with options)
List of 1
$ eval: logi FALSE
|
|................. | 24%
ordinary text without R code
|
|................... | 27%
label: bag (with options)
List of 4
$ fig : logi TRUE
$ fig.width : num 4
$ fig.height: num 4
$ echo : logi FALSE
|
|.................... | 29%
inline R code fragments
|
|..................... | 31%
label: bag2
|
|....................... | 33%
ordinary text without R code
|
|........................ | 35%
label: getseq
|
|.......................... | 37%
ordinary text without R code
|
|........................... | 39%
label: getann
|
|............................. | 41%
ordinary text without R code
|
|.............................. | 43%
label: getgen
|
|............................... | 45%
ordinary text without R code
|
|................................. | 47%
label: showscript (with options)
List of 1
$ eval: logi FALSE
|
|.................................. | 49%
ordinary text without R code
|
|.................................... | 51%
label: lkqq (with options)
List of 1
$ eval: logi FALSE
|
|..................................... | 53%
ordinary text without R code
|
|....................................... | 55%
label: co (with options)
List of 1
$ echo: logi FALSE
|
|........................................ | 57%
ordinary text without R code
|
|......................................... | 59%
label: dosens (with options)
List of 1
$ fig: logi TRUE
|
|........................................... | 61%
label: doeq (with options)
List of 1
$ eval: logi FALSE
|
|............................................ | 63%
label: nnn (with options)
List of 1
$ echo: logi FALSE
|
|.............................................. | 65%
ordinary text without R code
|
|............................................... | 67%
label: lkar
|
|................................................. | 69%
ordinary text without R code
|
|.................................................. | 71%
label: coded (with options)
List of 1
$ eval: logi FALSE
|
|................................................... | 73%
ordinary text without R code
|
|..................................................... | 76%
label: disc
|
|...................................................... | 78%
ordinary text without R code
|
|........................................................ | 80%
label: fit
|
|......................................................... | 82%
ordinary text without R code
|
|........................................................... | 84%
label: cali
|
|............................................................ | 86%
ordinary text without R code
|
|............................................................. | 88%
label: demomodco (with options)
List of 3
$ fig : logi TRUE
$ fig.width : num 7
$ fig.height: num 4
|
|............................................................... | 90%
ordinary text without R code
|
|................................................................ | 92%
label: cleanup (with options)
List of 1
$ echo: logi FALSE
|
|.................................................................. | 94%
ordinary text without R code
|
|................................................................... | 96%
label: unnamed-chunk-3 (with options)
List of 2
$ results: chr "asis"
$ echo : logi FALSE
|
|..................................................................... | 98%
ordinary text without R code
|
|......................................................................| 100%
label: sess
output file: cloudeqtl.knit.md
/usr/bin/pandoc +RTS -K512m -RTS cloudeqtl.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output cloudeqtl.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'
Output created: cloudeqtl.html
>
>
> knitr::purl(".buildvig/eQTL/cloudeqtl.Rmd", ".buildvig/eQTL/cloudeqtl.R")
processing file: .buildvig/eQTL/cloudeqtl.Rmd
|
| | 0%
|
|. | 2%
|
|... | 4%
|
|.... | 6%
|
|..... | 8%
|
|....... | 10%
|
|........ | 12%
|
|......... | 14%
|
|........... | 16%
|
|............ | 18%
|
|............. | 20%
|
|............... | 22%
|
|................ | 24%
|
|................. | 27%
|
|................... | 29%
|
|.................... | 31%
|
|..................... | 33%
|
|....................... | 35%
|
|........................ | 37%
|
|......................... | 39%
|
|........................... | 41%
|
|............................ | 43%
|
|............................. | 45%
|
|............................... | 47%
|
|................................ | 49%
|
|................................. | 51%
|
|.................................. | 53%
|
|.................................... | 55%
|
|..................................... | 57%
|
|...................................... | 59%
|
|........................................ | 61%
|
|......................................... | 63%
|
|.......................................... | 65%
|
|............................................ | 67%
|
|............................................. | 69%
|
|.............................................. | 71%
|
|................................................ | 73%
|
|................................................. | 76%
|
|.................................................. | 78%
|
|.................................................... | 80%
|
|..................................................... | 82%
|
|...................................................... | 84%
|
|........................................................ | 86%
|
|......................................................... | 88%
|
|.......................................................... | 90%
|
|............................................................ | 92%
|
|............................................................. | 94%
|
|.............................................................. | 96%
|
|................................................................ | 98%
|
|.................................................................| 100%
output file: .buildvig/eQTL/cloudeqtl.R
[1] ".buildvig/eQTL/cloudeqtl.R"
>
>