Back to Workflows build report for BioC 3.7 |
This page was generated on 2018-02-28 12:45:05 -0500 (Wed, 28 Feb 2018).
Package 1/6 | Hostname | OS / Arch | INSTALL | BUILD | BUILD VIG | ||||||
annotation 1.0.6 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] |
Package: annotation |
Version: 1.0.6 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildvig/annotation/Annotating_Genomic_Ranges.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildvig/annotation/Annotating_Genomic_Ranges.Rmd", ".buildvig/annotation/Annotating_Genomic_Ranges.R")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildvig/annotation/Annotation_Resources.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildvig/annotation/Annotation_Resources.Rmd", ".buildvig/annotation/Annotation_Resources.R")' |
StartedAt: 2018-02-28 12:31:21 -0500 (Wed, 28 Feb 2018) |
EndedAt: 2018-02-28 12:36:18 -0500 (Wed, 28 Feb 2018) |
EllapsedTime: 296.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildvig/annotation/Annotating_Genomic_Ranges.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildvig/annotation/Annotating_Genomic_Ranges.Rmd", ".buildvig/annotation/Annotating_Genomic_Ranges.R")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'rmarkdown::render(".buildvig/annotation/Annotation_Resources.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.7-bioc/R/bin/R -q -e 'knitr::purl(".buildvig/annotation/Annotation_Resources.Rmd", ".buildvig/annotation/Annotation_Resources.R")' ### ############################################################################## ############################################################################## > rmarkdown::render(".buildvig/annotation/Annotating_Genomic_Ranges.Rmd", output_format="BiocStyle:::html_fragment") processing file: Annotating_Genomic_Ranges.Rmd | | | 0% | |.. | 2% ordinary text without R code | |... | 5% label: unnamed-chunk-1 (with options) List of 1 $ echo: logi FALSE | |..... | 7% ordinary text without R code | |...... | 9% label: unnamed-chunk-2 | |........ | 11% ordinary text without R code | |.......... | 14% label: unnamed-chunk-3 | |........... | 16% ordinary text without R code | |............. | 18% label: unnamed-chunk-4 | |.............. | 20% ordinary text without R code | |................ | 23% label: unnamed-chunk-5 | |.................. | 25% ordinary text without R code | |................... | 27% label: unnamed-chunk-6 | |..................... | 30% ordinary text without R code | |...................... | 32% label: unnamed-chunk-7 | |........................ | 34% ordinary text without R code | |......................... | 36% label: 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|................................................................ | 91% ordinary text without R code | |................................................................. | 93% label: unnamed-chunk-21 | |................................................................... | 95% ordinary text without R code | |.................................................................... | 98% label: sess | |......................................................................| 100% ordinary text without R code output file: Annotating_Genomic_Ranges.knit.md /usr/bin/pandoc +RTS -K512m -RTS Annotating_Genomic_Ranges.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output Annotating_Genomic_Ranges.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' Output created: Annotating_Genomic_Ranges.html > > > knitr::purl(".buildvig/annotation/Annotating_Genomic_Ranges.Rmd", ".buildvig/annotation/Annotating_Genomic_Ranges.R") processing file: .buildvig/annotation/Annotating_Genomic_Ranges.Rmd | | | 0% | |. | 2% | |... | 5% | |.... | 7% | |...... | 9% | |....... | 11% | |......... | 14% | |.......... | 16% | |............ | 18% | |............. | 20% | |............... | 23% | |................ | 25% | |.................. | 27% | |................... | 30% | |..................... | 32% | |...................... | 34% | |........................ | 36% | |......................... | 39% | |........................... | 41% | |............................ | 43% | |.............................. | 45% | |............................... | 48% | |................................ | 50% | |.................................. | 52% | 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|............................................................. | 93% | |.............................................................. | 95% | |................................................................ | 98% | |.................................................................| 100% output file: .buildvig/annotation/Annotating_Genomic_Ranges.R [1] ".buildvig/annotation/Annotating_Genomic_Ranges.R" > > > rmarkdown::render(".buildvig/annotation/Annotation_Resources.Rmd", output_format="BiocStyle:::html_fragment") processing file: Annotation_Resources.Rmd | | | 0% | | | 1% ordinary text without R code | |. | 1% label: unnamed-chunk-1 (with options) List of 1 $ eval: logi FALSE | |.. | 2% ordinary text without R code | |.. | 3% label: unnamed-chunk-2 (with options) List of 1 $ echo: logi FALSE | |.. | 4% ordinary text without R code | |... | 4% label: unnamed-chunk-3 (with options) List of 1 $ eval: logi FALSE | |.... | 5% ordinary text without R code | |.... | 6% label: 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text without R code | |......................................................................| 99% label: unnamed-chunk-71 | |......................................................................| 100% ordinary text without R code output file: Annotation_Resources.knit.md /usr/bin/pandoc +RTS -K512m -RTS Annotation_Resources.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output Annotation_Resources.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.7-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' Output created: Annotation_Resources.html Warning message: call dbDisconnect() when finished working with a connection > > > knitr::purl(".buildvig/annotation/Annotation_Resources.Rmd", 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|............................................................... | 97% | |................................................................ | 98% | |................................................................ | 99% | |.................................................................| 99% | |.................................................................| 100% output file: .buildvig/annotation/Annotation_Resources.R [1] ".buildvig/annotation/Annotation_Resources.R" > >