Package: geuvPack

Version: 1.12.0

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:geuvPack.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings geuvPack_1.12.0.tar.gz

StartedAt: 2018-10-16 10:59:34 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 11:02:40 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 185.6 seconds

RetCode: 0

Status:  OK

CheckDir: geuvPack.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:geuvPack.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings geuvPack_1.12.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/geuvPack.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geuvPack/DESCRIPTION’ ... OK
* this is package ‘geuvPack’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geuvPack’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 93.1Mb
  sub-directories of 1Mb or more:
    data  93.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gtpath: no visible global function definition for ‘is’
Undefined global functions or variables:
  is
Consider adding
  importFrom("methods", "is")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Failed with error:  'package 'DelayedArray' could not be loaded'
  Error in .requirePackage(package) : 
    unable to find required package 'SummarizedExperiment'
  Calls: <Anonymous> ... getClass -> getClassDef -> .classEnv -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
geuFPKM 8.516  0.108   8.629
gsvs    8.192  0.112   8.309
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.7-data-experiment/meat/geuvPack.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL geuvPack
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘geuvPack’ ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geuvPack)

name	user	system	elapsed
geuFPKM	8.516	0.108	8.629
gsvs	8.192	0.112	8.309
gtpath	0.000	0.000	0.001