RnaSeqTutorial 0.18.0
Nicolas Delhomme
| Snapshot Date: 2018-10-16 07:35:22 -0400 (Tue, 16 Oct 2018) |
| URL: https://git.bioconductor.org/packages/RnaSeqTutorial |
| Branch: RELEASE_3_7 |
| Last Commit: a4cc7d9 |
| Last Changed Date: 2018-04-30 10:31:27 -0400 (Mon, 30 Apr 2018) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RnaSeqTutorial
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* checking for file ‘RnaSeqTutorial/DESCRIPTION’ ... OK
* preparing ‘RnaSeqTutorial’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: easyRNASeq
Warning: Package 'RnaSeqTutorial' is deprecated and will be removed from
Bioconductor version 3.8
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from ‘package:easyRNASeq’:
basename
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Loading required package: BiocParallel
Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:base’:
expand.grid
Loading required package: IRanges
Loading required package: XVector
Attaching package: ‘Biostrings’
The following object is masked from ‘package:base’:
strsplit
Loading required package: Rsamtools
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: GenomicAlignments
Loading required package: SummarizedExperiment
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: DelayedArray
Loading required package: matrixStats
Attaching package: ‘matrixStats’
The following objects are masked from ‘package:Biobase’:
anyMissing, rowMedians
The following object is masked from ‘package:easyRNASeq’:
rowRanges
Attaching package: ‘DelayedArray’
The following objects are masked from ‘package:matrixStats’:
colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges
The following object is masked from ‘package:Biostrings’:
type
The following object is masked from ‘package:easyRNASeq’:
type
The following objects are masked from ‘package:base’:
aperm, apply
Loading required package: BSgenome
Loading required package: rtracklayer
Error: processing vignette 'RnaSeqTutorial.Rnw' failed with diagnostics:
chunk 16 (label = Exon Transcript object transformation)
Error : The 'universe' argument of the RangedData() constructor function is
defunct.
Execution halted