Package: KEGGandMetacoreDzPathwaysGEO

Version: 0.114.0

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.114.0.tar.gz

StartedAt: 2018-10-16 11:06:06 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 11:06:51 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 45.1 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.114.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘0.114.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.7Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.7-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL KEGGandMetacoreDzPathwaysGEO
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (KEGGandMetacoreDzPathwaysGEO)

name	user	system	elapsed
GSE1145	0.348	0.016	0.380
GSE11906	3.084	0.040	3.344
GSE14924_CD4	0.264	0.020	0.294
GSE14924_CD8	0.272	0.008	0.313
GSE16759	0.340	0.000	0.345
GSE19420	0.236	0.008	0.252
GSE20164	0.076	0.004	0.079
GSE22780	0.224	0.004	0.229
GSE23878	0.936	0.016	2.904
GSE24739_G0	0.508	0.004	0.624
GSE24739_G1	0.452	0.008	0.462
GSE30153	0.572	0.008	0.581
GSE32676	0.728	0.008	0.737
GSE38666_epithelia	0.312	0.020	0.343
GSE38666_stroma	0.296	0.016	0.339
GSE4183	0.272	0.000	0.291
GSE42057	1.040	0.016	1.077
GSE7305	0.816	0.008	0.839
KEGGandMetacoreDzPathwaysGEO-package	0.668	0.008	0.685