Package: ELMER.data

Version: 2.4.2

Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:ELMER.data.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings ELMER.data_2.4.2.tar.gz

StartedAt: 2018-10-16 10:53:33 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 10:56:00 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 147.3 seconds

RetCode: 0

Status:  OK

CheckDir: ELMER.data.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:ELMER.data.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings ELMER.data_2.4.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/ELMER.data.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ELMER.data/DESCRIPTION’ ... OK
* this is package ‘ELMER.data’ version ‘2.4.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .travis.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ELMER.data’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 287.7Mb
  sub-directories of 1Mb or more:
    data  286.3Mb
    doc     1.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Note: found 36 marked UTF-8 strings
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.7-data-experiment/meat/ELMER.data.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL ELMER.data
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘ELMER.data’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ELMER.data)

name	user	system	elapsed
ELMER.data	0.000	0.000	0.001
EPIC.hg19.manifest	0.000	0.000	0.001
EPIC.hg38.manifest	0.000	0.000	0.001
EPIC.manifest	0.000	0.000	0.001
EPIC.manifest.hg38	0.000	0.000	0.001
Probes.motif.hg19.450K	0	0	0
Probes.motif.hg19.EPIC	0	0	0
Probes.motif.hg38.450K	0	0	0
Probes.motif.hg38.EPIC	0	0	0
data	0	0	0
hm450.hg19.manifest	0	0	0
hm450.hg38.manifest	0.000	0.000	0.001
hm450.manifest	0.004	0.000	0.001
hm450.manifest.hg38	0.000	0.000	0.001
mae.promoter	0.000	0.000	0.001