Yuan Tian
| Snapshot Date: 2018-10-16 07:35:22 -0400 (Tue, 16 Oct 2018) |
| URL: https://git.bioconductor.org/packages/ChAMPdata |
| Branch: RELEASE_3_7 |
| Last Commit: ddf3bd2 |
| Last Changed Date: 2018-04-30 10:31:28 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 experimental data |
This page was generated on 2018-10-16 14:18:34 -0400 (Tue, 16 Oct 2018).
| Package 47/342 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ChAMPdata 2.12.0 Yuan Tian
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: ChAMPdata |
| Version: 2.12.0 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:ChAMPdata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings ChAMPdata_2.12.0.tar.gz |
| StartedAt: 2018-10-16 10:42:29 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 10:45:59 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 209.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ChAMPdata.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:ChAMPdata.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings ChAMPdata_2.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/ChAMPdata.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChAMPdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChAMPdata’ version ‘2.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChAMPdata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 712.9Mb
sub-directories of 1Mb or more:
data 589.2Mb
extdata 123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
Error in nrow(x@elementMetadata) :
no slot of name "elementMetadata" for this object of class "RGChannelSetExtended"
Calls: <Anonymous> ... check_one -> lapply -> FUN -> length -> length -> nrow
Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ChAMPdata-package 30.484 0.528 32.332
testDataSet 10.144 0.092 10.246
AnnoEPIC 6.280 0.032 6.409
EPIC.manifest.hg38 5.076 0.100 5.558
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.7-data-experiment/meat/ChAMPdata.Rcheck/00check.log’
for details.
ChAMPdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL ChAMPdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘ChAMPdata’ ... ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (ChAMPdata)
ChAMPdata.Rcheck/ChAMPdata-Ex.timings
| name | user | system | elapsed | |
| Anno450K | 2.096 | 0.044 | 2.156 | |
| AnnoEPIC | 6.280 | 0.032 | 6.409 | |
| CellTypeMeans27K | 0.004 | 0.000 | 0.013 | |
| CellTypeMeans450K | 0.000 | 0.000 | 0.012 | |
| ChAMPdata-package | 30.484 | 0.528 | 32.332 | |
| ControlProbes450K | 0.000 | 0.000 | 0.001 | |
| ControlProbesEPIC | 0.004 | 0.000 | 0.001 | |
| EPIC.manifest.hg38 | 5.076 | 0.100 | 5.558 | |
| EPIC.manifest.pop.hg38 | 1.756 | 0.020 | 1.931 | |
| EPICSimData | 2.128 | 0.084 | 2.212 | |
| MatchGeneName | 0.032 | 0.000 | 0.299 | |
| PathwayList | 0.500 | 0.000 | 0.599 | |
| bloodCtl | 0.004 | 0.000 | 0.003 | |
| hm450.manifest.hg38 | 2.668 | 0.008 | 3.241 | |
| hm450.manifest.pop.hg38 | 0.824 | 0.004 | 1.021 | |
| hprdAsigH | 2.784 | 0.172 | 2.976 | |
| illumina450Gr | 2.372 | 0.036 | 2.416 | |
| illuminaEPICGr | 2.684 | 0.004 | 2.693 | |
| multi.hit | 0.884 | 0.000 | 0.915 | |
| probe.features | 0.712 | 0.004 | 0.719 | |
| probe.features.epic | 1.660 | 0.004 | 1.666 | |
| probeInfoALL.epic.lv | 0.716 | 0.000 | 0.718 | |
| probeInfoALL.lv | 0.548 | 0.000 | 0.549 | |
| snp.hit | 0.956 | 0.012 | 0.993 | |
| testDataSet | 10.144 | 0.092 | 10.246 | |