Davide Risso
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/zinbwave |
| Branch: RELEASE_3_7 |
| Last Commit: 6fe1e59 |
| Last Changed Date: 2018-04-30 10:35:47 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:44:06 -0400 (Wed, 17 Oct 2018).
| Package 1560/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| zinbwave 1.2.0 Davide Risso
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: zinbwave |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/zinbwave_1.2.0.tar.gz && rm -rf zinbwave.buildbin-libdir && mkdir zinbwave.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zinbwave.buildbin-libdir zinbwave_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL zinbwave_1.2.0.zip && rm zinbwave_1.2.0.tar.gz zinbwave_1.2.0.zip |
| StartedAt: 2018-10-16 19:37:53 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:40:00 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 127.5 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/zinbwave_1.2.0.tar.gz && rm -rf zinbwave.buildbin-libdir && mkdir zinbwave.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=zinbwave.buildbin-libdir zinbwave_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL zinbwave_1.2.0.zip && rm zinbwave_1.2.0.tar.gz zinbwave_1.2.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 97257 100 97257 0 0 1478k 0 --:--:-- --:--:-- --:--:-- 1666k
install for i386
* installing *source* package 'zinbwave' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'zinbwave'
finding HTML links ... done
ZinbModel-class html
computeDevianceResiduals html
computeObservationalWeights html
getAlpha_mu html
getAlpha_pi html
getBeta_mu html
getBeta_pi html
getEpsilon_W html
getEpsilon_alpha html
getEpsilon_beta_mu html
getEpsilon_beta_pi html
getEpsilon_gamma_mu html
getEpsilon_gamma_pi html
getEpsilon_zeta html
getGamma_mu html
getGamma_pi html
getLogMu html
getLogitPi html
getMu html
getPhi html
getPi html
getTheta html
getV_mu html
getV_pi html
getW html
getX_mu html
getX_pi html
getZeta html
glmWeightedF html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/glmWeightedF.Rd:35: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/glmWeightedF.Rd:52: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
imputeZeros html
independentFiltering html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/independentFiltering.Rd:19: file link 'glmLRT' in package 'edgeR' does not exist and so has been treated as a topic
loglik html
nFactors html
nFeatures html
nParams html
nSamples html
orthogonalizeTraceNorm html
penalty html
pvalueAdjustment html
solveRidgeRegression html
toydata html
zinb.loglik html
zinb.loglik.dispersion html
zinb.loglik.dispersion.gradient html
zinb.loglik.matrix html
zinb.loglik.regression html
zinb.loglik.regression.gradient html
zinb.regression.parseModel html
zinbAIC html
zinbBIC html
zinbFit html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbFit.Rd:56: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbFit.Rd:81: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
zinbInitialize html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbInitialize.Rd:19: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
zinbModel html
zinbOptimize html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbOptimize.Rd:28: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
zinbOptimizeDispersion html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbOptimizeDispersion.Rd:27: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
zinbSim html
zinbwave html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbwave.Rd:58: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpYjRYf3/R.INSTALL1d2c36f868a5/zinbwave/man/zinbwave.Rd:98: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'zinbwave' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zinbwave' as zinbwave_1.2.0.zip
* DONE (zinbwave)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'zinbwave' successfully unpacked and MD5 sums checked
In R CMD INSTALL