Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:46:25 -0400 (Wed, 17 Oct 2018).
Package 1519/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
twilight 1.56.0 Stefanie Scheid
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
Package: twilight |
Version: 1.56.0 |
Command: rm -rf twilight.buildbin-libdir && mkdir twilight.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh twilight_1.56.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R twilight.buildbin-libdir |
StartedAt: 2018-10-17 02:18:18 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 02:19:09 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 51.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: twilight_1.56.0.tgz |
PackageFileSize: 994 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf twilight.buildbin-libdir && mkdir twilight.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh twilight_1.56.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R twilight.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=twilight.buildbin-libdir twilight_1.56.0.tar.gz' >>>>>>> * installing *source* package ‘twilight’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c confidence.line.c -o confidence.line.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c correlation.c -o correlation.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c kstest.c -o kstest.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c sep.c -o sep.o sep.c:70:16: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] ix[randnum]=fabs(1-ix[randnum]); ^ sep.c:70:16: note: use function 'abs' instead ix[randnum]=fabs(1-ix[randnum]); ^˜˜˜ abs sep.c:97:20: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] ix[randnum]=fabs(1-ix[randnum]); ^ sep.c:97:20: note: use function 'abs' instead ix[randnum]=fabs(1-ix[randnum]); ^˜˜˜ abs sep.c:116:19: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] ix[randnum]=fabs(1-ix[randnum]); ^ sep.c:116:19: note: use function 'abs' instead ix[randnum]=fabs(1-ix[randnum]); ^˜˜˜ abs sep.c:143:16: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] ix[randnum]=fabs(1-ix[randnum]); ^ sep.c:143:16: note: use function 'abs' instead ix[randnum]=fabs(1-ix[randnum]); ^˜˜˜ abs 4 warnings generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c twosample.perm.c -o twosample.perm.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c twosample.single.c -o twosample.single.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o twilight.so confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.7-bioc/meat/twilight.buildbin-libdir/twilight/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (twilight) >>>>>>> >>>>>>> FIXING LINKS FOR twilight.buildbin-libdir/twilight/libs//twilight.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "twilight.buildbin-libdir/twilight/libs//twilight.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "twilight.buildbin-libdir/twilight/libs//twilight.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "twilight.buildbin-libdir/twilight/libs//twilight.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "twilight.buildbin-libdir/twilight/libs//twilight.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "twilight.buildbin-libdir/twilight/libs//twilight.so"