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###
### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/survcomp_1.30.0.tar.gz && rm -rf survcomp.buildbin-libdir && mkdir survcomp.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=survcomp.buildbin-libdir survcomp_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL survcomp_1.30.0.zip && rm survcomp_1.30.0.tar.gz survcomp_1.30.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 445k 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 445k 100 445k 0 0 7380k 0 --:--:-- --:--:-- --:--:-- 8091k
install for i386
* installing *source* package 'survcomp' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c concordance.index.c -o concordance.index.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o
foo_mrmr_ensemble_surv.cpp: In function 'double get_correlation_ensemble(double*, int*, int, int, int)':
foo_mrmr_ensemble_surv.cpp:12:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
^
foo_mrmr_ensemble_surv.cpp:22:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
^
foo_mrmr_ensemble_surv.cpp: In function 'double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:106:10: warning: variable 'uhs' set but not used [-Wunused-but-set-variable]
double uhs[Ns];
^
foo_mrmr_ensemble_surv.cpp:107:10: warning: variable 'rphs' set but not used [-Wunused-but-set-variable]
double rphs[Ns];
^
foo_mrmr_ensemble_surv.cpp: In function 'void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)':
foo_mrmr_ensemble_surv.cpp:202:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< size_subset; ++i){
^
foo_mrmr_ensemble_surv.cpp:203:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0; j< (nvar-1); ++j){
^
foo_mrmr_ensemble_surv.cpp:214:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< nvar-1; ++i){
^
foo_mrmr_ensemble_surv.cpp:216:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=i+1; j< nvar-1; ++j){
^
foo_mrmr_ensemble_surv.cpp:191:17: warning: unused variable 'msurv_x' [-Wunused-variable]
int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x;
^
foo_mrmr_ensemble_surv.cpp:191:27: warning: unused variable 'ustrat_x' [-Wunused-variable]
int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x;
^
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_tree(tree<int>&, tree<double>&, double*, int*, int, int, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:351:7: warning: unused variable 'cnt_back' [-Wunused-variable]
int cnt_back=cnt2;
^
foo_mrmr_ensemble_surv.cpp:286:7: warning: unused variable 'nsub' [-Wunused-variable]
int nsub, *prev_sel,nsamples_boot=nsamples,*to_remove;
^
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:393:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0; k< rep_boot; ++k){
^
foo_mrmr_ensemble_surv.cpp:396:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=1;i<= size_boot;++i){
^
foo_mrmr_ensemble_surv.cpp:400:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size ; ++i ){
^
foo_mrmr_ensemble_surv.cpp:401:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int j=0; j< size ; ++j ){
^
foo_mrmr_ensemble_surv.cpp:412:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< rep_boot;++i){
^
foo_mrmr_ensemble_surv.cpp:419:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< rep_boot;++i){
^
foo_mrmr_ensemble_surv.cpp:387:10: warning: unused variable 'mim' [-Wunused-variable]
double *mim, *boot_val, *mat_info;
^
foo_mrmr_ensemble_surv.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
foo_mrmr_ensemble_surv.cpp:448:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0;j< nbvar; j++){
^
foo_mrmr_ensemble_surv.cpp:437:15: warning: variable 'jmax' set but not used [-Wunused-but-set-variable]
unsigned int jmax;
^
foo_mrmr_ensemble_surv.cpp:439:9: warning: unused variable 'max_val' [-Wunused-variable]
double max_val=-1000;
^
foo_mrmr_ensemble_surv.cpp: In function 'int verify_equivalentset_nparents(tree<int>&, tree<int>::pre_order_iterator, tree<int>::pre_order_iterator, tree<double>&, int)':
foo_mrmr_ensemble_surv.cpp:467:7: warning: unused variable 'found' [-Wunused-variable]
bool found=false;
^
foo_mrmr_ensemble_surv.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree<int>&, tree<int>::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:593:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=1;i<= nsamples;++i){
^
foo_mrmr_ensemble_surv.cpp:596:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< n; ++i ){
^
foo_mrmr_ensemble_surv.cpp:597:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int j=0; j< n; ++j ){
^
foo_mrmr_ensemble_surv.cpp:604:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< max_elements ;++k){
^
foo_mrmr_ensemble_surv.cpp:646:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int i=0;i<=max_depth;++i){
^
foo_mrmr_ensemble_surv.cpp:654:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< n;++k){
^
foo_mrmr_ensemble_surv.cpp:657:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k<=max(res_tmp_new.depth(it_local),max_depth) ;++k){
^
foo_mrmr_ensemble_surv.cpp:661:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< n;++k){
^
foo_mrmr_ensemble_surv.cpp:578:24: warning: unused variable 'nsamples_boot' [-Wunused-variable]
int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
^
foo_mrmr_ensemble_surv.cpp:578:48: warning: unused variable 'tmp_val_max_ind' [-Wunused-variable]
int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
^
foo_mrmr_ensemble_surv.cpp:578:66: warning: unused variable 'prev_sel_tmp' [-Wunused-variable]
int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
^
foo_mrmr_ensemble_surv.cpp:579:21: warning: unused variable 'vec_sort' [-Wunused-variable]
double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr;
^
foo_mrmr_ensemble_surv.cpp:579:63: warning: variable 'vec_local_max_sd' set but not used [-Wunused-but-set-variable]
double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr;
^
foo_mrmr_ensemble_surv.cpp: In function 'SEXPREC* mrmr_cIndex_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
foo_mrmr_ensemble_surv.cpp:786:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< *npredn;++i){
^
foo_mrmr_ensemble_surv.cpp:820:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k<length_res_old;k++){
^
foo_mrmr_ensemble_surv.cpp:834:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k<length_res;k++){
^
foo_mrmr_ensemble_surv.cpp:839:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(i==(*npredn-1)){
^
foo_mrmr_ensemble_surv.cpp:843:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k<length_res;k++){
^
foo_mrmr_ensemble_surv.cpp:801:13: warning: unused variable 'cnt2' [-Wunused-variable]
int cnt=1,cnt2=0;
^
foo_mrmr_ensemble_surv.cpp:804:7: warning: unused variable 'rootdepth' [-Wunused-variable]
int rootdepth=res_tree.depth(it_final);
^
foo_mrmr_ensemble_surv.cpp:817:7: warning: unused variable 'ind' [-Wunused-variable]
int ind=0;
^
foo_mrmr_ensemble_surv.cpp:733:30: warning: unused variable 'res_all' [-Wunused-variable]
int *predn, *rep_boot,*res,*res_all,*res_all2, *namat;
^
foo_mrmr_ensemble_surv.cpp:733:39: warning: unused variable 'res_all2' [-Wunused-variable]
int *predn, *rep_boot,*res,*res_all,*res_all2, *namat;
^
foo_mrmr_ensemble_surv.cpp:734:6: warning: unused variable 'vec_tmp' [-Wunused-variable]
int vec_tmp;
^
foo_mrmr_ensemble_surv.cpp:859:9: warning: 'Rres' may be used uninitialized in this function [-Wmaybe-uninitialized]
return Rres;
^
foo_mrmr_ensemble_surv.cpp:821:25: warning: 'res_old' may be used uninitialized in this function [-Wmaybe-uninitialized]
res_all[k]=res_old[k];
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c foo_mrmr_surv.cpp -o foo_mrmr_surv.o
foo_mrmr_surv.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr_surv.cpp:12:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
^
foo_mrmr_surv.cpp:22:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
^
foo_mrmr_surv.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr_surv.cpp:49:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< size_subset; ++i){
^
foo_mrmr_surv.cpp:50:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0; j< nvar; ++j){
^
foo_mrmr_surv.cpp:56:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< nvar; ++i){
^
foo_mrmr_surv.cpp:58:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=i+1; j< nvar; ++j){
^
foo_mrmr_surv.cpp: In function 'double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int*, int*)':
foo_mrmr_surv.cpp:146:10: warning: variable 'uhs' set but not used [-Wunused-but-set-variable]
double uhs[Ns];
^
foo_mrmr_surv.cpp:147:10: warning: variable 'rphs' set but not used [-Wunused-but-set-variable]
double rphs[Ns];
^
foo_mrmr_surv.cpp: In function 'SEXPREC* mrmr_cIndex(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
foo_mrmr_surv.cpp:301:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i < *nsample; ++i){
^
foo_mrmr_surv.cpp:341:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( int l=0; l<n; ++l )
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c survcomp_init.cpp -o survcomp_init.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o survcomp.dll tmp.def concordance.index.o foo_mrmr_ensemble_surv.o foo_mrmr_surv.o survcomp_init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/survcomp.buildbin-libdir/survcomp/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'survcomp'
finding HTML links ... done
D.index html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpwNPxYW/R.INSTALL2014723936a8/survcomp/man/D.index.Rd:43: file link 'normOrder' in package 'SuppDists' does not exist and so has been treated as a topic
balanced.hazard.ratio html
bhr.comp html
breastCancerData html
censor.time html
cindex.comp html
cindex.comp.meta html
combine.est html
combine.test html
concordance.index html
concordanceIndexC html
cvpl html
dindex.comp html
dindex.comp.meta html
fisherz html
forestplot.surv html
get_concordanceIndex_onevariable html
getsurv2 html
hazard.ratio html
hr.comp html
hr.comp.meta html
hr.comp2 html
iauc.comp html
ibsc.comp html
km.coxph.plot html
logpl html
mainz7g html
metaplot.surv html
finding level-2 HTML links ... done
mrmr.cindex html
mrmr.cindex.ensemble html
mrmr_cIndex html
mrmr_cIndex_ensemble_remove html
nki7g html
no.at.risk html
sbrier.score2proba html
score2proba html
survcomp-package html
td.sens.spec html
tdrocc html
test.hetero.est html
test.hetero.test html
transbig7g html
unt7g html
upp7g html
vdx7g html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'survcomp' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c concordance.index.c -o concordance.index.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o
foo_mrmr_ensemble_surv.cpp: In function 'double get_correlation_ensemble(double*, int*, int, int, int)':
foo_mrmr_ensemble_surv.cpp:12:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
^
foo_mrmr_ensemble_surv.cpp:22:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
^
foo_mrmr_ensemble_surv.cpp: In function 'double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:106:10: warning: variable 'uhs' set but not used [-Wunused-but-set-variable]
double uhs[Ns];
^
foo_mrmr_ensemble_surv.cpp:107:10: warning: variable 'rphs' set but not used [-Wunused-but-set-variable]
double rphs[Ns];
^
foo_mrmr_ensemble_surv.cpp: In function 'void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)':
foo_mrmr_ensemble_surv.cpp:202:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< size_subset; ++i){
^
foo_mrmr_ensemble_surv.cpp:203:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0; j< (nvar-1); ++j){
^
foo_mrmr_ensemble_surv.cpp:214:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< nvar-1; ++i){
^
foo_mrmr_ensemble_surv.cpp:216:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=i+1; j< nvar-1; ++j){
^
foo_mrmr_ensemble_surv.cpp:191:17: warning: unused variable 'msurv_x' [-Wunused-variable]
int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x;
^
foo_mrmr_ensemble_surv.cpp:191:27: warning: unused variable 'ustrat_x' [-Wunused-variable]
int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x;
^
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_tree(tree<int>&, tree<double>&, double*, int*, int, int, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:351:7: warning: unused variable 'cnt_back' [-Wunused-variable]
int cnt_back=cnt2;
^
foo_mrmr_ensemble_surv.cpp:286:7: warning: unused variable 'nsub' [-Wunused-variable]
int nsub, *prev_sel,nsamples_boot=nsamples,*to_remove;
^
foo_mrmr_ensemble_surv.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:393:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0; k< rep_boot; ++k){
^
foo_mrmr_ensemble_surv.cpp:396:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=1;i<= size_boot;++i){
^
foo_mrmr_ensemble_surv.cpp:400:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size ; ++i ){
^
foo_mrmr_ensemble_surv.cpp:401:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int j=0; j< size ; ++j ){
^
foo_mrmr_ensemble_surv.cpp:412:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< rep_boot;++i){
^
foo_mrmr_ensemble_surv.cpp:419:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< rep_boot;++i){
^
foo_mrmr_ensemble_surv.cpp:387:10: warning: unused variable 'mim' [-Wunused-variable]
double *mim, *boot_val, *mat_info;
^
foo_mrmr_ensemble_surv.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
foo_mrmr_ensemble_surv.cpp:448:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0;j< nbvar; j++){
^
foo_mrmr_ensemble_surv.cpp:437:15: warning: variable 'jmax' set but not used [-Wunused-but-set-variable]
unsigned int jmax;
^
foo_mrmr_ensemble_surv.cpp:439:9: warning: unused variable 'max_val' [-Wunused-variable]
double max_val=-1000;
^
foo_mrmr_ensemble_surv.cpp: In function 'int verify_equivalentset_nparents(tree<int>&, tree<int>::pre_order_iterator, tree<int>::pre_order_iterator, tree<double>&, int)':
foo_mrmr_ensemble_surv.cpp:467:7: warning: unused variable 'found' [-Wunused-variable]
bool found=false;
^
foo_mrmr_ensemble_surv.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree<int>&, tree<int>::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)':
foo_mrmr_ensemble_surv.cpp:593:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=1;i<= nsamples;++i){
^
foo_mrmr_ensemble_surv.cpp:596:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< n; ++i ){
^
foo_mrmr_ensemble_surv.cpp:597:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int j=0; j< n; ++j ){
^
foo_mrmr_ensemble_surv.cpp:604:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< max_elements ;++k){
^
foo_mrmr_ensemble_surv.cpp:646:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int i=0;i<=max_depth;++i){
^
foo_mrmr_ensemble_surv.cpp:654:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< n;++k){
^
foo_mrmr_ensemble_surv.cpp:657:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k<=max(res_tmp_new.depth(it_local),max_depth) ;++k){
^
foo_mrmr_ensemble_surv.cpp:661:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k< n;++k){
^
foo_mrmr_ensemble_surv.cpp:578:24: warning: unused variable 'nsamples_boot' [-Wunused-variable]
int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
^
foo_mrmr_ensemble_surv.cpp:578:48: warning: unused variable 'tmp_val_max_ind' [-Wunused-variable]
int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
^
foo_mrmr_ensemble_surv.cpp:578:66: warning: unused variable 'prev_sel_tmp' [-Wunused-variable]
int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete;
^
foo_mrmr_ensemble_surv.cpp:579:21: warning: unused variable 'vec_sort' [-Wunused-variable]
double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr;
^
foo_mrmr_ensemble_surv.cpp:579:63: warning: variable 'vec_local_max_sd' set but not used [-Wunused-but-set-variable]
double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr;
^
foo_mrmr_ensemble_surv.cpp: In function 'SEXPREC* mrmr_cIndex_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
foo_mrmr_ensemble_surv.cpp:786:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i< *npredn;++i){
^
foo_mrmr_ensemble_surv.cpp:820:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k<length_res_old;k++){
^
foo_mrmr_ensemble_surv.cpp:834:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k<length_res;k++){
^
foo_mrmr_ensemble_surv.cpp:839:7: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(i==(*npredn-1)){
^
foo_mrmr_ensemble_surv.cpp:843:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int k=0;k<length_res;k++){
^
foo_mrmr_ensemble_surv.cpp:801:13: warning: unused variable 'cnt2' [-Wunused-variable]
int cnt=1,cnt2=0;
^
foo_mrmr_ensemble_surv.cpp:804:7: warning: unused variable 'rootdepth' [-Wunused-variable]
int rootdepth=res_tree.depth(it_final);
^
foo_mrmr_ensemble_surv.cpp:817:7: warning: unused variable 'ind' [-Wunused-variable]
int ind=0;
^
foo_mrmr_ensemble_surv.cpp:733:30: warning: unused variable 'res_all' [-Wunused-variable]
int *predn, *rep_boot,*res,*res_all,*res_all2, *namat;
^
foo_mrmr_ensemble_surv.cpp:733:39: warning: unused variable 'res_all2' [-Wunused-variable]
int *predn, *rep_boot,*res,*res_all,*res_all2, *namat;
^
foo_mrmr_ensemble_surv.cpp:734:6: warning: unused variable 'vec_tmp' [-Wunused-variable]
int vec_tmp;
^
foo_mrmr_ensemble_surv.cpp:859:9: warning: 'Rres' may be used uninitialized in this function [-Wmaybe-uninitialized]
return Rres;
^
foo_mrmr_ensemble_surv.cpp:821:25: warning: 'res_old' may be used uninitialized in this function [-Wmaybe-uninitialized]
res_all[k]=res_old[k];
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c foo_mrmr_surv.cpp -o foo_mrmr_surv.o
foo_mrmr_surv.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr_surv.cpp:12:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
^
foo_mrmr_surv.cpp:22:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( unsigned int i=0; i< size; ++i ) {
^
foo_mrmr_surv.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr_surv.cpp:49:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< size_subset; ++i){
^
foo_mrmr_surv.cpp:50:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=0; j< nvar; ++j){
^
foo_mrmr_surv.cpp:56:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0; i< nvar; ++i){
^
foo_mrmr_surv.cpp:58:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int j=i+1; j< nvar; ++j){
^
foo_mrmr_surv.cpp: In function 'double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int*, int*)':
foo_mrmr_surv.cpp:146:10: warning: variable 'uhs' set but not used [-Wunused-but-set-variable]
double uhs[Ns];
^
foo_mrmr_surv.cpp:147:10: warning: variable 'rphs' set but not used [-Wunused-but-set-variable]
double rphs[Ns];
^
foo_mrmr_surv.cpp: In function 'SEXPREC* mrmr_cIndex(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
foo_mrmr_surv.cpp:301:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned int i=0;i < *nsample; ++i){
^
foo_mrmr_surv.cpp:341:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for( int l=0; l<n; ++l )
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c survcomp_init.cpp -o survcomp_init.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o survcomp.dll tmp.def concordance.index.o foo_mrmr_ensemble_surv.o foo_mrmr_surv.o survcomp_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/survcomp.buildbin-libdir/survcomp/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'survcomp' as survcomp_1.30.0.zip
* DONE (survcomp)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'survcomp' successfully unpacked and MD5 sums checked
In R CMD INSTALL
