Wolfgang Kaisers
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/seqTools |
| Branch: RELEASE_3_7 |
| Last Commit: 9ef438a |
| Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:39 -0400 (Wed, 17 Oct 2018).
| Package 1354/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| seqTools 1.14.0 Wolfgang Kaisers
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: seqTools |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/seqTools_1.14.0.tar.gz && rm -rf seqTools.buildbin-libdir && mkdir seqTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqTools.buildbin-libdir seqTools_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL seqTools_1.14.0.zip && rm seqTools_1.14.0.tar.gz seqTools_1.14.0.zip |
| StartedAt: 2018-10-16 19:19:05 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:19:48 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 43.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/seqTools_1.14.0.tar.gz && rm -rf seqTools.buildbin-libdir && mkdir seqTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqTools.buildbin-libdir seqTools_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL seqTools_1.14.0.zip && rm seqTools_1.14.0.tar.gz seqTools_1.14.0.zip
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install for i386
* installing *source* package 'seqTools' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c seqTools.c -o seqTools.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o seqTools.dll tmp.def seqTools.o -lm -LC:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/seqTools.buildbin-libdir/seqTools/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'seqTools'
finding HTML links ... done
Fastqq-class html
ascii2char html
cbDistMatrix html
collectDur html
countDnaKmers html
countFastaKmers html
countGenomeKmers html
countSpliceKmers html
fastqKmerLocs html
fastqKmerSubsetLocs html
fastqq html
gcContentMatrix html
kMerIndex html
meltDownK html
mergeFastqq html
mergedPhred html
phredDist html
phredTable html
plotGCcontent html
plotKmerCount html
plotNucCount html
plotNucFreq html
plotPhredQuant html
propPhred html
revCountDnaKmers html
seqTools-package html
simFastqqRunTimes html
sim_fq html
trimFastq html
writeFai html
writeSimContFastq html
writeSimFastq html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'seqTools' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c seqTools.c -o seqTools.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o seqTools.dll tmp.def seqTools.o -lm -LC:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/seqTools.buildbin-libdir/seqTools/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqTools' as seqTools_1.14.0.zip
* DONE (seqTools)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'seqTools' successfully unpacked and MD5 sums checked
In R CMD INSTALL