Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:21:09 -0400 (Wed, 17 Oct 2018).
Package 1169/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
qvalue 2.12.0 John D. Storey
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: qvalue |
Version: 2.12.0 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:qvalue.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings qvalue_2.12.0.tar.gz |
StartedAt: 2018-10-16 03:01:04 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 03:01:33 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 28.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: qvalue.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:qvalue.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings qvalue_2.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/qvalue.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘qvalue/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘qvalue’ version ‘2.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘qvalue’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE lfdr: no visible global function definition for ‘qnorm’ lfdr: no visible global function definition for ‘density’ lfdr: no visible global function definition for ‘smooth.spline’ lfdr: no visible global function definition for ‘predict’ lfdr: no visible global function definition for ‘dnorm’ pi0est: no visible global function definition for ‘smooth.spline’ pi0est: no visible global function definition for ‘predict’ pi0est: no visible global function definition for ‘quantile’ plot.qvalue: no visible global function definition for ‘quantile’ write.qvalue: no visible global function definition for ‘write.table’ Undefined global functions or variables: density dnorm predict qnorm quantile smooth.spline write.table Consider adding importFrom("stats", "density", "dnorm", "predict", "qnorm", "quantile", "smooth.spline") importFrom("utils", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.7-bioc/meat/qvalue.Rcheck/00check.log’ for details.
qvalue.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL qvalue ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘qvalue’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (qvalue)
qvalue.Rcheck/qvalue-Ex.timings
name | user | system | elapsed | |
empPvals | 0.044 | 0.028 | 0.169 | |
hedenfalk | 1.160 | 0.028 | 1.189 | |
hist.qvalue | 0.432 | 0.000 | 0.434 | |
lfdr | 0.416 | 0.000 | 0.415 | |
pi0est | 1.020 | 0.000 | 1.019 | |
plot.qvalue | 0.604 | 0.000 | 0.604 | |
qvalue | 1.052 | 0.000 | 1.050 | |
summary.qvalue | 0.028 | 0.000 | 0.030 | |
write.qvalue | 0.048 | 0.000 | 0.047 | |