Ulrich Bodenhofer
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/podkat |
| Branch: RELEASE_3_7 |
| Last Commit: 950564c |
| Last Changed Date: 2018-04-30 10:35:36 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:40:14 -0400 (Wed, 17 Oct 2018).
| Package 1110/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| podkat 1.12.0 Ulrich Bodenhofer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: podkat |
| Version: 1.12.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:podkat.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings podkat_1.12.0.tar.gz |
| StartedAt: 2018-10-17 04:01:21 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 04:11:55 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 634.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: podkat.Rcheck |
| Warnings: 1 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:podkat.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings podkat_1.12.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/podkat.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'podkat/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'podkat' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'podkat' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/AssocTestResultRanges-class.Rd:40: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/AssocTestResultRanges-class.Rd:40: file link 'elementMetadata' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/AssocTestResultRanges-class.Rd:106: file link 'print' in package 'podkat' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/GenotypeMatrix-class.Rd:56: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/assocTest-methods.Rd:41: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/assocTest-methods.Rd:103: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/assocTest-methods.Rd:246: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/assocTest-methods.Rd:253: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/filterResult-methods.Rd:62: file link 'p.adjust' in package 'podkat' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/genotypeMatrix-methods.Rd:33: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/genotypeMatrix-methods.Rd:149: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/genotypeMatrix-methods.Rd:150: file link 'SnpSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/genotypeMatrix-methods.Rd:152: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/partitionRegions-methods.Rd:20: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/partitionRegions-methods.Rd:55: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/qqplot-methods.Rd:76: file link 'qqplot' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmasked-datasets.Rd:30: file link 'pseudoautosomal.hg18' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmasked-datasets.Rd:31: file link 'pseudoautosomal.hg19' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmasked-datasets.Rd:32: file link 'pseudoautosomal.hg38' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:6: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:13: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:19: file link 'pseudoautosomal.hg18' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:20: file link 'pseudoautosomal.hg19' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:21: file link 'pseudoautosomal.hg38' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:29: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:34: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:47: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:51: file link 'pseudoautosomal.hg18' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:52: file link 'pseudoautosomal.hg19' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:53: file link 'pseudoautosomal.hg38' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/weights-methods.Rd:20: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/weights-methods.Rd:65: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/weights-methods.Rd:92: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/podkat.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
assocTest.TabixFile: no visible global function definition for 'path'
readGenotypeMatrix.TabixFile: no visible global function definition for
'path'
readSampleNamesFromVcfHeader: no visible global function definition for
'path'
readVariantInfo.TabixFile: no visible global function definition for
'path'
weights.AssocTestResultRanges.TabixFile: no visible global function
definition for 'path'
assocTest,TabixFile-NullModel: no visible global function definition
for 'path'
readGenotypeMatrix,TabixFile-GRanges: no visible global function
definition for 'path'
readVariantInfo,TabixFile-GRanges: no visible global function
definition for 'path'
Undefined global functions or variables:
path
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.7-bioc/R/library/podkat/libs/i386/podkat.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Found 'rand', possibly from 'rand' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
unmaskedRegions 95.49 4.75 145.08
assocTest-methods 16.36 1.44 17.80
plot-methods 9.09 1.26 10.36
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
unmaskedRegions 92.06 4.14 96.22
assocTest-methods 15.36 1.39 16.75
plot-methods 10.58 1.19 11.78
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/podkat.Rcheck/00check.log'
for details.
podkat.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/podkat_1.12.0.tar.gz && rm -rf podkat.buildbin-libdir && mkdir podkat.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=podkat.buildbin-libdir podkat_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL podkat_1.12.0.zip && rm podkat_1.12.0.tar.gz podkat_1.12.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 333k 100 333k 0 0 6395k 0 --:--:-- --:--:-- --:--:-- 7400k
install for i386
* installing *source* package 'podkat' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c R_init_podkat.cpp -o R_init_podkat.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c bernoulliExact.cpp -o bernoulliExact.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c checkAndFixGenotype.cpp -o checkAndFixGenotype.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c cumMax.cpp -o cumMax.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c doubleMale.cpp -o doubleMale.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kernels.cpp -o kernels.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pValues.cpp -o pValues.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c partitionRegions.cpp -o partitionRegions.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c qfc.cpp -o qfc.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c readGenotypeMatrix.cpp -o readGenotypeMatrix.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c readVariantInfo.cpp -o readVariantInfo.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o podkat.dll tmp.def R_init_podkat.o bernoulliExact.o checkAndFixGenotype.o cumMax.o doubleMale.o kernels.o pValues.o partitionRegions.o qfc.o readGenotypeMatrix.o readVariantInfo.o C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/usrlib/i386/libbam.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/usrlib/i386/libbam.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/usrlib/i386/libbcf.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/usrlib/i386/libtabix.a -lws2_32 -pthread -LC:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/podkat.buildbin-libdir/podkat/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'p.adjust' from package 'stats' in package 'podkat'
Creating a generic function for 'qqplot' from package 'stats' in package 'podkat'
** help
*** installing help indices
converting help for package 'podkat'
finding HTML links ... done
AssocTestResult-class html
AssocTestResultRanges-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/AssocTestResultRanges-class.Rd:40: file link 'mcols' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/AssocTestResultRanges-class.Rd:40: file link 'elementMetadata' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/AssocTestResultRanges-class.Rd:106: file link 'print' in package 'podkat' does not exist and so has been treated as a topic
GenotypeMatrix-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/GenotypeMatrix-class.Rd:56: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
NullModel-class html
VariantInfo-class html
assocTest-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/assocTest-methods.Rd:41: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/assocTest-methods.Rd:103: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/assocTest-methods.Rd:246: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/assocTest-methods.Rd:253: file link 'makePSOCKcluster' in package 'parallel' does not exist and so has been treated as a topic
computeKernel html
filterResult-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/filterResult-methods.Rd:62: file link 'p.adjust' in package 'podkat' does not exist and so has been treated as a topic
genotypeMatrix-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/genotypeMatrix-methods.Rd:33: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/genotypeMatrix-methods.Rd:149: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/genotypeMatrix-methods.Rd:150: file link 'SnpSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/genotypeMatrix-methods.Rd:152: file link 'eSet' in package 'Biobase' does not exist and so has been treated as a topic
hgA html
nullModel-methods html
p.adjust-methods html
partitionRegions-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/partitionRegions-methods.Rd:20: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/partitionRegions-methods.Rd:55: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
plot-methods html
podkat-package html
print-methods html
qqplot-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/qqplot-methods.Rd:76: file link 'qqplot' in package 'stats' does not exist and so has been treated as a topic
readGenotypeMatrix-methods html
readRegionsFromBedFile html
readSampleNamesFromVcfHeader html
readVariantInfo-methods html
sort-methods html
split-methods html
unmasked-datasets html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmasked-datasets.Rd:30: file link 'pseudoautosomal.hg18' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmasked-datasets.Rd:31: file link 'pseudoautosomal.hg19' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmasked-datasets.Rd:32: file link 'pseudoautosomal.hg38' in package 'GWASTools' does not exist and so has been treated as a topic
unmaskedRegions html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:6: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:13: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:19: file link 'pseudoautosomal.hg18' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:20: file link 'pseudoautosomal.hg19' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:21: file link 'pseudoautosomal.hg38' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:29: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:34: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:47: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:51: file link 'pseudoautosomal.hg18' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:52: file link 'pseudoautosomal.hg19' in package 'GWASTools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/unmaskedRegions.Rd:53: file link 'pseudoautosomal.hg38' in package 'GWASTools' does not exist and so has been treated as a topic
weightFuncs html
weights-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/weights-methods.Rd:20: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/weights-methods.Rd:65: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpAXyWgd/R.INSTALL1dd848ac1cdc/podkat/man/weights-methods.Rd:92: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'podkat' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c R_init_podkat.cpp -o R_init_podkat.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c bernoulliExact.cpp -o bernoulliExact.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c checkAndFixGenotype.cpp -o checkAndFixGenotype.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c cumMax.cpp -o cumMax.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c doubleMale.cpp -o doubleMale.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c kernels.cpp -o kernels.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c pValues.cpp -o pValues.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c partitionRegions.cpp -o partitionRegions.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c qfc.cpp -o qfc.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c readGenotypeMatrix.cpp -o readGenotypeMatrix.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c readVariantInfo.cpp -o readVariantInfo.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o podkat.dll tmp.def R_init_podkat.o bernoulliExact.o checkAndFixGenotype.o cumMax.o doubleMale.o kernels.o pValues.o partitionRegions.o qfc.o readGenotypeMatrix.o readVariantInfo.o C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/usrlib/x64/libbam.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/usrlib/x64/libbam.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/usrlib/x64/libbcf.a C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rsamtools/usrlib/x64/libtabix.a -lws2_32 -pthread -LC:/Users/biocbuild/bbs-3.7-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/podkat.buildbin-libdir/podkat/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'podkat' as podkat_1.12.0.zip
* DONE (podkat)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'podkat' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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podkat.Rcheck/examples_i386/podkat-Ex.timings
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podkat.Rcheck/examples_x64/podkat-Ex.timings
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