Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:46:30 -0400 (Wed, 17 Oct 2018).
Package 1104/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
plier 1.50.0 Crispin Miller
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
Package: plier |
Version: 1.50.0 |
Command: rm -rf plier.buildbin-libdir && mkdir plier.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh plier_1.50.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R plier.buildbin-libdir |
StartedAt: 2018-10-17 01:52:08 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 01:52:56 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 47.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: plier_1.50.0.tgz |
PackageFileSize: 42.8 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf plier.buildbin-libdir && mkdir plier.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh plier_1.50.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R plier.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=plier.buildbin-libdir plier_1.50.0.tar.gz' >>>>>>> * installing *source* package ‘plier’ ... ** libs clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c affyplier.cpp -o affyplier.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c plier_impl.cpp -o plier_impl.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c plieralg.cpp -o plieralg.o plieralg.cpp:49:12: warning: unused variable 'g_ErrorCode' [-Wunused-variable] static int g_ErrorCode=NoError; ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c rwrapper.cpp -o rwrapper.o rwrapper.cpp:192:5: warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] delete pm_ptr; ^ [] rwrapper.cpp:151:23: note: allocated with 'new[]' here double **pm_ptr = new double *[*num_exp]; ^ rwrapper.cpp:193:5: warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] delete mm_ptr; ^ [] rwrapper.cpp:152:23: note: allocated with 'new[]' here double **mm_ptr = new double *[*num_exp]; ^ rwrapper.cpp:194:5: warning: 'delete' applied to a pointer that was allocated with 'new[]'; did you mean 'delete[]'? [-Wmismatched-new-delete] delete rpct; ^ [] rwrapper.cpp:159:21: note: allocated with 'new[]' here long *rpct = new long [*num_exp]; /* the API expects a long array that it wants to delete itself (replicate). We have an int array that R owns so we need to create the long one here, but let the API handle the clean up. Which is nice. */ ^ 3 warnings generated. clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o plier.so affyplier.o plier_impl.o plieralg.o rwrapper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.7-bioc/meat/plier.buildbin-libdir/plier/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (plier) >>>>>>> >>>>>>> FIXING LINKS FOR plier.buildbin-libdir/plier/libs//plier.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "plier.buildbin-libdir/plier/libs//plier.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "plier.buildbin-libdir/plier/libs//plier.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "plier.buildbin-libdir/plier/libs//plier.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "plier.buildbin-libdir/plier/libs//plier.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "plier.buildbin-libdir/plier/libs//plier.so"