Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:57:55 -0400 (Wed, 17 Oct 2018).
Package 1061/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
pathprint 1.10.4 Sokratis Kariotis
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: pathprint |
Version: 1.10.4 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:pathprint.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings pathprint_1.10.4.tar.gz |
StartedAt: 2018-10-16 23:07:46 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 23:14:20 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 393.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: pathprint.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:pathprint.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings pathprint_1.10.4.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/pathprint.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘pathprint/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘pathprint’ version ‘1.10.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘pathprint’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE exprs2fingerprint: no visible binding for global variable ‘chipframe’ exprs2fingerprint: no visible binding for global variable ‘genesets’ thresholdFingerprint: no visible binding for global variable ‘platform.thresholds’ Undefined global functions or variables: chipframe genesets platform.thresholds * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed single.chip.enrichment 81.295 14.504 96.580 diffPathways 51.421 8.781 60.727 consensusDistance 29.805 2.667 43.746 pathprint-package 26.155 2.922 29.447 thresholdFingerprint 25.690 3.088 28.985 consensusFingerprint 20.415 1.962 27.325 customCDFAnn 20.052 1.719 22.005 pluripotents.frame 19.391 1.797 21.407 exprs2fingerprint 18.248 1.274 19.690 platform.thresholds 13.697 1.380 15.268 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.7-bioc/meat/pathprint.Rcheck/00check.log’ for details.
pathprint.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL pathprint ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘pathprint’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (pathprint)
pathprint.Rcheck/pathprint-Ex.timings
name | user | system | elapsed | |
consensusDistance | 29.805 | 2.667 | 43.746 | |
consensusFingerprint | 20.415 | 1.962 | 27.325 | |
customCDFAnn | 20.052 | 1.719 | 22.005 | |
diffPathways | 51.421 | 8.781 | 60.727 | |
exprs2fingerprint | 18.248 | 1.274 | 19.690 | |
genesets | 0.003 | 0.001 | 0.003 | |
pathprint-package | 26.155 | 2.922 | 29.447 | |
pathprint.Ce.gs | 0.031 | 0.001 | 0.033 | |
pathprint.Dm.gs | 0.030 | 0.001 | 0.031 | |
pathprint.Dr.gs | 0.073 | 0.002 | 0.075 | |
pathprint.Hs.gs | 0.058 | 0.004 | 0.062 | |
pathprint.Mm.gs | 0.096 | 0.001 | 0.099 | |
pathprint.Rn.gs | 0.082 | 0.001 | 0.086 | |
platform.thresholds | 13.697 | 1.380 | 15.268 | |
pluripotents.frame | 19.391 | 1.797 | 21.407 | |
single.chip.enrichment | 81.295 | 14.504 | 96.580 | |
thresholdFingerprint | 25.690 | 3.088 | 28.985 | |